Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a18
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.44 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 427 EIPVQTEIDSVKNDSSAITLECDMKMLSPMTLSPKSVED 311
           EIP++ E    +N+S      C++   SP T+ P+++ D
Sbjct: 338 EIPLEEEEWENENESDYQDAFCNIVSCSPQTVHPETIID 376



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 568 QHSYAHPYTHAADLLEIKEENNDKGDIFYA 479
           +HSY H  T    LL I ++    GDI Y+
Sbjct: 128 KHSYVHTITVPNKLLRISQD----GDILYS 153


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 243 RSVNLIQWSCQIFGGNPCRSYSLDWPKSRG 154
           RSV L  W+    G +P + Y +++  S+G
Sbjct: 890 RSVQL-SWAAPYDGNSPIKRYVIEYKISKG 918


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 62  SCLNIVATSSMYCKWFY 12
           SCL IVAT ++ C  F+
Sbjct: 523 SCLGIVATMAVACLLFH 539


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 62  SCLNIVATSSMYCKWFY 12
           SCL IVAT ++ C  F+
Sbjct: 613 SCLGIVATMAVACLLFH 629


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 82  LNITFQ*LKTYN*SVFGGNFFQNYAPRL 165
           LN+ F+   T+N S +    F N+ PRL
Sbjct: 334 LNVHFRSPSTHNMSPWVRQVFLNWMPRL 361


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = +2

Query: 467 FVTACVEYVAFIVVLLFDFEKVCCVC 544
           +V+    YV+ + ++ F  E+   +C
Sbjct: 119 YVSEMSSYVSVLTIVAFSMERYLAIC 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,596
Number of Sequences: 438
Number of extensions: 4693
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)