Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a17
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 332 3e-91
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 332 3e-91
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 319 1e-87
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 304 4e-83
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 30 1.9
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 30 2.6
11_08_0063 - 28125067-28125969 29 3.4
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 29 5.9
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 29 5.9
07_03_0633 + 20120560-20123464,20123608-20123672 29 5.9
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 332 bits (815), Expect = 3e-91
Identities = 149/208 (71%), Positives = 178/208 (85%)
Frame = -1
Query: 774 DRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEHRLIDDMVAYAMKS 595
++K+PLYLSTKNTILKKYDGRFKDIFQ++Y+ ++K +FE AGIWYEHRLIDDMVAYA+KS
Sbjct: 202 EKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKS 261
Query: 594 EGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQ 415
EGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+CPDGKT+EAEAAHGTVTRH+R +Q+
Sbjct: 262 EGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 321
Query: 414 GKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIK 235
G ETSTN IASIFAWTRGL HRAKLD+N L +F + LE CI +ESG MTKDLA+ +
Sbjct: 322 GGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFTQKLEAACIGAVESGKMTKDLALLVH 381
Query: 234 GMNNVKRSDYYETFEFMDKLAENLKVAL 151
G +NV RS Y T EF+D +A+ L+ L
Sbjct: 382 GSSNVTRSHYLNTEEFIDAVADELRSRL 409
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 332 bits (815), Expect = 3e-91
Identities = 152/208 (73%), Positives = 177/208 (85%)
Frame = -1
Query: 774 DRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEHRLIDDMVAYAMKS 595
++K+PLYLSTKNTILKKYDGRFKDIFQ++Y+ +K +FE AGIWYEHRLIDDMVAYA+KS
Sbjct: 202 EKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKFEAAGIWYEHRLIDDMVAYALKS 261
Query: 594 EGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQ 415
EGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+CPDGKT+EAEAAHGTVTRHFR +Q+
Sbjct: 262 EGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQK 321
Query: 414 GKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIK 235
G ETSTN IASIFAWTRGL HRAKLD+N L +FA LE C+ T+ESG MTKDLA+ I
Sbjct: 322 GGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFALKLEAACVGTVESGKMTKDLALLIH 381
Query: 234 GMNNVKRSDYYETFEFMDKLAENLKVAL 151
G +NV RS Y T EF+D +A L+ L
Sbjct: 382 GSSNVTRSHYLNTEEFIDAVAAELRSRL 409
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 319 bits (784), Expect = 1e-87
Identities = 147/208 (70%), Positives = 176/208 (84%)
Frame = -1
Query: 783 VCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEHRLIDDMVAYA 604
+ L +K+PLYLSTKNTILKKYDGRFKDIFQ++Y+ ++K++FE+ IWYEHRLIDDMVAYA
Sbjct: 233 MALSKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKEKFEENSIWYEHRLIDDMVAYA 292
Query: 603 MKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRF 424
+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLM+SVL+ DGKT+EAEAAHGTVTRHFR
Sbjct: 293 VKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMSSVLLSSDGKTLEAEAAHGTVTRHFRL 352
Query: 423 YQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI 244
+Q+G+ETSTN IASIFAWTRGL HRAKLD ND L +F + LE CIET+ESG MTKDLA+
Sbjct: 353 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNDRLLDFTKKLESACIETVESGKMTKDLAL 412
Query: 243 CIKGMNNVKRSDYYETFEFMDKLAENLK 160
I G V R Y T EF+D +A+ L+
Sbjct: 413 LIHG-PKVTREFYLNTEEFIDAVAQQLR 439
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 304 bits (747), Expect = 4e-83
Identities = 145/231 (62%), Positives = 178/231 (77%), Gaps = 18/231 (7%)
Frame = -1
Query: 789 IQVCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIW----------- 643
+ + +++PLYLSTKNTILKKYDGRFKDIFQ+ Y+ +++ +F+DAGIW
Sbjct: 240 MNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFDDAGIWNMEPYFPPLCP 299
Query: 642 -------YEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICP 484
YEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+CP
Sbjct: 300 NHFCCGRYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCP 359
Query: 483 DGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAET 304
DG+T+EAEAAHGTVTRH+R +Q+G ETSTN IASIFAWT GL HRAKLD+N L +F +
Sbjct: 360 DGRTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQK 419
Query: 303 LEKVCIETIESGIMTKDLAICIKGMNNVKRSDYYETFEFMDKLAENLKVAL 151
LE C+ T+ESG MTKDLA+ + G NV R Y T EF+D +AE+L+ L
Sbjct: 420 LEAACVGTVESGKMTKDLALLVHG-PNVSRDKYLNTVEFIDAVAEDLRTRL 469
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 603 MKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAE 460
++S W YD S ++A+ + + T V++ PDGKTV E
Sbjct: 376 LRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTRE 423
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -1
Query: 567 NYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKE 406
N DG+VQ S+A YG GL + + G G H+ Y KE
Sbjct: 103 NDDGEVQVFSLADAYGGDGLFSGARMEDSGCIAGGYEVDGRTVDHYLVYVSTKE 156
>11_08_0063 - 28125067-28125969
Length = 300
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -1
Query: 567 NYDGDVQSDSVAQGYGSLG--LMTSVLICPDGKTVEAEA--AHGTVTR-HFRFY 421
++ G D +A+ G G L+T+ + C DG+ EA A G + R H RFY
Sbjct: 157 DHGGSANYDELAKRLGEHGGVLLTATVRCMDGQETSGEAAVATGLIGRIHVRFY 210
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 483 DGKTVEAEAAHGTVTRHFRFYQQGKETSTN 394
DGKT+EA + HG V + F+ + +E N
Sbjct: 326 DGKTIEAMSVHGDVRKLFKSISEVEEKDGN 355
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 483 DGKTVEAEAAHGTVTRHFRFYQQGKETSTN 394
DGKT+EA + HG V + F+ + +E N
Sbjct: 326 DGKTIEAMSVHGDVRKLFKSISEVEEKDGN 355
>07_03_0633 + 20120560-20123464,20123608-20123672
Length = 989
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 819 CIYY*LCSFFIQVCLDRKYPLYLSTKNTILKKYDG-RFKDIFQDIYDREYKKQFEDAGIW 643
C+ Y CS F L K L + ++++DG K++ ++ +D +++ F IW
Sbjct: 411 CLCY--CSIFPSGYLFEKNMLIHMWIASFMQQHDGIGMKEMEKEWFDELFRRSFFQPTIW 468
Query: 642 YEHRLIDDMVAYAMKSEGG 586
++ DM+ + S G
Sbjct: 469 KNRYIMPDMIRKPLCSIAG 487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,154,288
Number of Sequences: 37544
Number of extensions: 410325
Number of successful extensions: 893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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