Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a17
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 352 2e-97
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 315 3e-86
Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical pr... 32 0.43
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 32 0.57
AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical ... 30 2.3
U41540-8|AAW30667.1| 571|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical pr... 29 5.3
U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL032620-1|CAA21487.1| 354|Caenorhabditis elegans Hypothetical ... 28 7.1
AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf (tbp-asso... 28 7.1
Z81489-1|CAB04005.2| 266|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 28 9.3
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 352 bits (865), Expect = 2e-97
Identities = 164/207 (79%), Positives = 183/207 (88%), Gaps = 2/207 (0%)
Frame = -1
Query: 777 LDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEHRLIDDMVAYAMK 598
L RK+PLYLSTKNTILKKYDGRFKDIF +IY EY+ +F+ AGIWYEHRLIDDMVA AMK
Sbjct: 201 LQRKFPLYLSTKNTILKKYDGRFKDIFAEIYP-EYEAEFKAAGIWYEHRLIDDMVAQAMK 259
Query: 597 SEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQ 418
S+GGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVL+CPDGKTVEAEAAHGTVTRH+R +Q
Sbjct: 260 SDGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQ 319
Query: 417 QGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICI 238
+G+ETSTNPIASIFAW+RGL HRA LD N AL+ FA LE VCIET+E+G +TKDLAIC+
Sbjct: 320 KGQETSTNPIASIFAWSRGLAHRATLDKNSALETFANNLEAVCIETMEAGFLTKDLAICV 379
Query: 237 KGMN--NVKRSDYYETFEFMDKLAENL 163
KG N V R+DY TFEF+DKLAENL
Sbjct: 380 KGGNASAVTRTDYLNTFEFLDKLAENL 406
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 824 TDASIIDFAHSSFKFA 777
TD SI DFAH+SFK+A
Sbjct: 185 TDDSIRDFAHASFKYA 200
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 315 bits (773), Expect = 3e-86
Identities = 144/205 (70%), Positives = 170/205 (82%), Gaps = 1/205 (0%)
Frame = -1
Query: 786 QVCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEHRLIDDMVAY 607
Q L +++PLYLSTKNTILKKYDGRFKDIFQDIY+++Y+ F++ IWYEHRLIDD VA
Sbjct: 220 QYALMKQWPLYLSTKNTILKKYDGRFKDIFQDIYEKKYEADFKNNKIWYEHRLIDDQVAQ 279
Query: 606 AMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFR 427
A+KS GGFVWACKNYDGDVQSD VAQGYGSLGLM+SVL+CPDGKT+EAEAAHGTVTRH+R
Sbjct: 280 ALKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMSSVLMCPDGKTIEAEAAHGTVTRHYR 339
Query: 426 FYQQGKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLA 247
+Q+G TSTNPIASIFAWTRGL HR LDNN+ALK F+ TLEK CI+T+E G MTKDL+
Sbjct: 340 EHQKGNSTSTNPIASIFAWTRGLHHRGVLDNNEALKTFSLTLEKACIDTVEEGKMTKDLS 399
Query: 246 ICIKG-MNNVKRSDYYETFEFMDKL 175
ICI G ++ Y T +F+ +
Sbjct: 400 ICIHGTKKGTEKGAYLITEDFLSAI 424
>Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical
protein C39E9.8b protein.
Length = 246
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = -1
Query: 405 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 229
T+T+PI SI +L+RAKL ++ + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 228 NNV--KRSDYYETFEFMDKLAEN 166
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical
protein C39E9.8a protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = -1
Query: 405 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 229
T+T+PI SI +L+RAKL ++ + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 228 NNV--KRSDYYETFEFMDKLAEN 166
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 513 PVTHSPEQHYQIVRLHHNFCRPRQIHPLIS 602
PVT +PE+H + V+L HN P + PL++
Sbjct: 1208 PVTVTPEEHAEQVQLLHNLQNPSILRPLLN 1237
>AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical
protein ZK6.8 protein.
Length = 488
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -1
Query: 552 VQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFA 373
+ S + G G + L+T L G V + A+ TVT+HF ++ +T + S+FA
Sbjct: 159 IGSSCMIVGAGIIALIT-FLTAGQGSEVAMDLANATVTQHFE--RRFSDTEIYLLFSVFA 215
Query: 372 WTR--GLLHRAKLDNNDALKNFAETLEKV 292
G + A L +ND + N E+ +K+
Sbjct: 216 AISFVGCITFALLPSND-IGNCIESSKKI 243
>U41540-8|AAW30667.1| 571|Caenorhabditis elegans Hypothetical
protein F35H12.2c protein.
Length = 571
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 792 FIQVCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKK 667
+ +V L RKY STK I K R ++Y+ EYK+
Sbjct: 279 YFRVSLPRKYRTEASTKCLIHKAVKFRLNHSKLEVYENEYKR 320
>U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical
protein F35H12.2a protein.
Length = 930
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 792 FIQVCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKK 667
+ +V L RKY STK I K R ++Y+ EYK+
Sbjct: 638 YFRVSLPRKYRTEASTKCLIHKAVKFRLNHSKLEVYENEYKR 679
>U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical
protein F35H12.2b protein.
Length = 934
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 792 FIQVCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKK 667
+ +V L RKY STK I K R ++Y+ EYK+
Sbjct: 642 YFRVSLPRKYRTEASTKCLIHKAVKFRLNHSKLEVYENEYKR 683
>AL032620-1|CAA21487.1| 354|Caenorhabditis elegans Hypothetical
protein Y36E3A.1 protein.
Length = 354
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Frame = -1
Query: 414 GKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIK 235
G S PI S+F + + L+H+ ++ +DA+K E L+K ++ G ++A I+
Sbjct: 255 GIGNSILPIQSLFHFEKFLIHKLRITVDDAIK-IKEMLDKP--NNLKDGYFRVEIANKIE 311
Query: 234 -----GMNNVKRSD----YYETFEFMDKLAENLKVAL 151
G + + R+ YY+T E + L + + +AL
Sbjct: 312 LARVFGTDYIDRNGEITMYYQTEERLKYLIKFIPIAL 348
>AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 6.1
protein.
Length = 470
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = -1
Query: 411 KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIKG 232
K T ++ S R + AK+D LK T+E I T+E I KD+ G
Sbjct: 189 KNTPSSSTTSSLQMFRDAVKTAKIDQKVGLK--PSTIE---ILTVEQQIFMKDIITVCMG 243
Query: 231 MNNVKRSDYYETFE 190
++ KR + T E
Sbjct: 244 QDDKKRHEALYTLE 257
>Z81489-1|CAB04005.2| 266|Caenorhabditis elegans Hypothetical
protein C55A1.1 protein.
Length = 266
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 819 CIYY*LCSFFIQV-CLDRKYPLYLSTKNTILKKYDG 715
CIYY F + + + Y ++ST NTILKK+ G
Sbjct: 57 CIYYAFFGFSMGMFVIIFAYRSFVSTGNTILKKFKG 92
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 786 QVCLDRKYPLYLSTKNTILKKYDGRFKDIFQDIYDREYKKQFEDAGIWYEHRLID 622
Q C+DR P Y +I + ++KD F + D +Y+K+ + ++ +H++ID
Sbjct: 208 QACIDR--PNYHGI--SIEEFRFAKWKDTFGEDVDDDYRKRKDSGVVFVKHQVID 258
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 429 RFYQQG-KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKD 253
R Y++ KE I I WT+ + + DN+ K + T+E V + TI+ +T+
Sbjct: 966 RLYEEKEKEQRKKQIKGIEKWTKSMDFK---DNHKTAKFYNTTIENVNVTTIDKDHITES 1022
Query: 252 LA 247
A
Sbjct: 1023 YA 1024
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,476
Number of Sequences: 27780
Number of extensions: 380908
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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