Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a16
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 28 1.7
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 4.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 5.3
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 7.0
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 9.3
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 9.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.3
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -1
Query: 285 IDDYQKFLDDLAKNKKVELDEIKKKL-TTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTG 109
I DY+ L+D+ K K+V+L + L C G + P + + K+ G
Sbjct: 121 IHDYEISLEDMFKGKEVKLRATRNTLCPRCQGRGGKRFAKEKPCLSCDGKGVKQHLKHVG 180
Query: 108 SHR----QRFDETGKGKGIAGR 55
H Q +T GKG++ R
Sbjct: 181 PHHVTNSQVICDTCNGKGVSFR 202
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = -1
Query: 249 KNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQ 97
K+KK E++++++K+T +P + K+ +A + T S+ + H++
Sbjct: 120 KDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVETPETIESEASVDHKE 170
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 306 LKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAA-AAVDRLT 130
++S K + + K D+L K K EL +KK + + + HV + AA + ++
Sbjct: 69 IRSSKQTLINKVKAQDELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIV 128
Query: 129 DTSKY 115
D KY
Sbjct: 129 DEKKY 133
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = -1
Query: 774 SNIGAHFAAPVSSSKXKATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMS 595
S++ + P SSS +++ + S + SAS+ + D + + S Y+ + +
Sbjct: 142 SSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTT 201
Query: 594 TEAQNTDAAVEQVTQE--VKDVKLENGNAPGASNGTSS 487
T N+ ++ T + +G P SN +S+
Sbjct: 202 TNNWNSSSSFTSSTSSTPISSSYSSSGTLPSKSNKSSN 239
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 738 SSKXKATAGSISAATKSASLKRLSATDSLA*YMISSHK 625
SS AT+GS ++AT SA+ S+ S + SSH+
Sbjct: 359 SSTVSATSGSATSATGSATTTSYSSDSSASSSSSSSHE 396
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 388 LRERDGFSIGLGISKFGKRLEGFL 459
L D F++ + +SK GK GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 273 QKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTG 109
Q + + + ++E D I+KK+T+ QP K A + + TD K +G
Sbjct: 98 QSYNEPYMQRHRIE-DAIEKKMTSETQPSTDEKGRKVSATENSAPKKTDKEKSSG 151
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 291 LGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPA 157
L +DDY+KF +DL K + + + + C Q I + S A
Sbjct: 340 LNVDDYRKFREDLWKKRHGKRKVY--QCSNCSQTFINEDIQNSSA 382
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 110 ARTGSASMKLEKGRESPAGKT*STGPATSLDT 15
A TG A LEK S +GK TG A S T
Sbjct: 576 AATGEAKTNLEKAVTSASGKASFTGFAPSQST 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,034
Number of Sequences: 5004
Number of extensions: 61874
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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