Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a16
         (783 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    25   2.0  
AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram nega...    25   3.5  
AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram nega...    25   3.5  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.6  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   8.1  

>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 324 AIHFKKLKSVKLGIDDYQKFLDDLAKNKKVE 232
           A HF+  KS K+ ++ Y K      K  K+E
Sbjct: 101 ATHFEANKSFKITVETYNKHFSQREKVAKIE 131


>AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 8   YGWYPVT*PDPSTKSFLPAIPFPFPVSSKRCLCEPVYLLVSVNRSTAAAAAGDFVT 175
           Y  YP       TK+ LP   F    S+   +  P  + VS+N    A   GDF T
Sbjct: 247 YNGYPTA---TLTKNALPEQEFSKSFSTFGFVWTPDNITVSINGEDLATIGGDFWT 299


>AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 8   YGWYPVT*PDPSTKSFLPAIPFPFPVSSKRCLCEPVYLLVSVNRSTAAAAAGDFVT 175
           Y  YP       TK+ LP   F    S+   +  P  + VS+N    A   GDF T
Sbjct: 247 YNGYPTA---TLTKNALPEQEFSKSFSTFGFVWTPDNITVSINGEDLATIGGDFWT 299


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -1

Query: 201 CGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKGIAGRKDLVDGSGYVT 22
           C +    +H    P   AA   +    +   S  +R   TGKG+    + D V+ + Y +
Sbjct: 322 CKEASDNAHSRVDPDERAAASEIHQERR---SELKRAITTGKGQLFQQQIDEVNANVYGS 378

Query: 21  GYQ 13
           GYQ
Sbjct: 379 GYQ 381


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -3

Query: 427 RSQVRWKSHHALAKRQMDEASQSH-*WKENNNNGHGHSLQKTQIGKTRH 284
           R  +  K HH  +KR  D   Q+H  + E   NG         I +  H
Sbjct: 839 RRMISEKKHHKRSKRVKDGKQQNHVSFPEFVQNGSAKQFANDYINEVLH 887


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,612
Number of Sequences: 2352
Number of extensions: 15423
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)