Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a14
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 5e-04
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 35 0.002
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.003
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 34 0.005
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.006
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.056
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 30 0.056
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.074
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.074
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.17
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 0.23
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 0.52
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 26 0.92
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.2
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 1.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 1.6
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 2.1
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 2.1
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 24 3.7
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 24 3.7
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 24 4.9
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 24 4.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 6.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 23 6.5
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 23 6.5
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 23 8.5
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 8.5
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 23 8.5
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 23 8.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 23 8.5
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 37.1 bits (82), Expect = 5e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 92 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 9
+++CA+C P +L C HVFC C+
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL 384
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 35.1 bits (77), Expect = 0.002
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 83 CAVCLQKCQHPTKLSCGHVFCFLCVKV 3
C +C +K ++P LS G VFC+ C++V
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQV 283
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.7 bits (76), Expect = 0.003
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 92 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 9
+Y C +CL ++ + CGH+FC C+
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCI 230
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.9 bits (74), Expect = 0.005
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 83 CAVCLQKCQHPTKLSCGHVFCFLCV 9
C++C++ P CGH+FC+ C+
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCI 280
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.5 bits (73), Expect = 0.006
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 86 DCAVCLQKCQHPTKLSCGHVFCFLCV 9
+C +C + Q P CGH +C+ C+
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECL 109
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.056
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 83 CAVCLQKCQHPTKLS-CGHVFCFLCV 9
C CL++ ++S CGHV+CF C+
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.056
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 92 EYDCAVCLQKCQHPT-KLSCGHVFCFLCVKV 3
+++C+VCL C P + CGH C C+ +
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECMSM 633
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.074
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 83 CAVCLQKCQHPTKLSCGHVFCFLCVK 6
C +C + + P SC H FC C++
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIR 54
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.9 bits (64), Expect = 0.074
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 92 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 9
E +C +C P CGH FC C+
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCL 193
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.17
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 98 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 12
++ + C +C + + P +CGH FC C
Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.23
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 83 CAVCLQKCQHPTKLSCGHVFCFLCV 9
C +C + Q + C H FC LCV
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCV 735
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 0.52
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 104 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCV 9
S + DC +CLQK +LS CGH F + C+
Sbjct: 14 SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCI 47
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 0.92
Identities = 6/23 (26%), Positives = 17/23 (73%)
Frame = +2
Query: 29 HDRRIVLLDVDIFASKQHNHIPY 97
H+ +++ D+D+F+ +H+ +P+
Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 1.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Frame = -1
Query: 83 CAVCLQKCQH------PTKLSCGHVFCFLCV 9
C +C+Q+ P CGH +C+ C+
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACI 222
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 1.6
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 83 CAVC-LQKCQHPTKLSCGHVFCFLCVK 6
C+VC ++ + CGH FC+ C++
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQ 653
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 1.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Frame = -1
Query: 83 CAVCLQKCQHPTKLSCGHVFCFLCVK 6
C +C + +CGH++C C++
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLE 1117
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 2.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -1
Query: 83 CAVCLQK---CQHPTKLSCGHVFCFLCV 9
C+ ++K C H T C + FC++C+
Sbjct: 294 CSTTIEKNGGCNHMTCKKCKYEFCWVCL 321
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 2.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 38 CGHVFCFLCVKV 3
CGHV+C C KV
Sbjct: 212 CGHVYCGSCAKV 223
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.2 bits (50), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 86 DCAVCLQK-CQHPTKLSCGHVFCFLCV 9
+C +C + Q+P L+C H C C+
Sbjct: 876 ECPICCNEPIQNPLLLNCKHACCGDCL 902
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 3.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 38 CGHVFCFLCVK 6
CGH+FC C K
Sbjct: 167 CGHLFCSTCAK 177
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 4.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -1
Query: 125 KHAVLIFSHNMEYDCAVCLQK-----CQHPTKLSCGHVFCFLCVK 6
K+A L+ ++ C VC + C T+ CGHV C C++
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTR--CGHVSCQSCLR 202
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 4.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 53 PTKLSCGHVFCFLCVK 6
P +L CGH+ F C++
Sbjct: 323 PKRLPCGHILHFHCLR 338
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 6.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 77 VCLQKCQHPTKLSCGHVFC 21
+C + C KLSCG+ FC
Sbjct: 584 ICFRPCNK--KLSCGNHFC 600
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = -1
Query: 95 MEYDCAVCLQKC-----QHPTKLSCGHVFCFLCVK 6
M+ C +C + TK+ CGH+F C++
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQ 137
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 154 LPISKLLKY-VCSFVVFHNFLT 216
L + KL+K +C F++FH+F T
Sbjct: 24 LHVWKLIKLLICKFLLFHDFGT 45
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 83 CAVCLQKCQHPTKL--SCGHVFCFLCVK 6
C+VC +KL +CGH FC C++
Sbjct: 639 CSVC-NFSNWKSKLIPNCGHAFCSNCME 665
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 154 LPISKLLKYVCSFVVFHNFLTFQI-NFGWIRTN 249
LP+S + K++C F++ Q + W+R N
Sbjct: 290 LPLSAIAKHICQFLLRTKGKWRQAKKYTWVRDN 322
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 128 VHINYLILIYPFPNYLNMCVVL 193
+ + + +L PFPN LN+ ++L
Sbjct: 328 ISVRWYVLQNPFPNKLNLNMLL 349
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 70 KQTAQSYSILCEKINTACL 126
K T SY++LCE+ T+ L
Sbjct: 335 KFTIMSYNVLCERYATSTL 353
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.0 bits (47), Expect = 8.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 94 ILCEKINTACLSTHKL 141
+LCEK+N C++ L
Sbjct: 494 VLCEKLNRNCMNAQSL 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,206,278
Number of Sequences: 5004
Number of extensions: 22556
Number of successful extensions: 64
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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