Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a13
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.18
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 31 0.18
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 27 2.2
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 27 3.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 3.9
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 3.9
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 6.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 25 9.1
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 25 9.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 9.1
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 9.1
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 9.1
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.1
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.1 bits (67), Expect = 0.18
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Frame = -1
Query: 701 QQENLFLKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVTTKDVSLNSDLI 522
+ ENL L + KL+ + L + N +++++ + + T D S+NS ++
Sbjct: 785 KSENLLLTSVKDKLKADLSNLESKLSSLQQD-NFHMKAQIESSNQEYTATVD-SMNSRIL 842
Query: 521 D------VRQSILQQCNGS------NNTFNKNEFSTMKRQEYTSITELKQD 405
+ V S L +C+ N+F+ E T+ Q ++ITELKQD
Sbjct: 843 ELSNDLRVANSKLSECSDDVRRLTLQNSFDLREHQTLVLQLQSNITELKQD 893
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 227 YLLDFTKSNTSNSDVTDHTSKLYKQLPPINNRFLTGSEEFHNFMKNNKGVILPFRK 60
+LL++++ TSNS + D K++++L N + NF N V PF +
Sbjct: 327 FLLEWSQEVTSNSTLYDIIHKVFEKLSEDQNDIAPYPNPYQNFTTTNTTVKNPFER 382
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 500 QQCNGSNNTFNKNEFST--MKRQEYTSITELKQ 408
+ CN NNT +KN ST ++Y S+ +LK+
Sbjct: 80 RDCNRENNTEDKNVISTGIAVNEKYQSVLKLKE 112
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 748 RIDLNAYIYSNCIGWHSKKIYFLKN*YRN 662
R+D + + NC+G+ + K +FL+ Y N
Sbjct: 122 RMDHHCMWFKNCVGFRNHKFFFLECFYLN 150
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 428 SITELKQDNHSLLRPRTVVSRFSGEYF 348
S+ LK+ H+LL P +V R++ E+F
Sbjct: 317 SLKALKKIAHNLLPPVSVAERYANEFF 343
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 725 LQQLYWVAQQENLFLKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVTT 552
LQQ ++ F + ++E + C+ + K+ +EKL A C++F+ T
Sbjct: 425 LQQAVRISHPSTTFCSNVENDIKEIFEVCKDYCMLHVQNNLKAFEEKLWAACKDFLVT 482
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.9
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = -1
Query: 554 TKDVSLNSDLIDVRQSILQQCNGSNNTFNKNEFSTMKRQEYTSITELK-QDNHSLLRPRT 378
TK++SL +D IDV ++ +++ N S + N +E E T++ EL + LL T
Sbjct: 13 TKEISLETDWIDVIET-MRETNESPKSQNPSE-------EATTVNELSCEAKPKLLFTPT 64
Query: 377 VVSRFSGEYFWTVKDKNGKIEKL-YDYSCQSV-GNCDVIHRIRQYTVYYDKDYLLDFTKS 204
S G + + D K + Y YS + + G C ++ + LL+F S
Sbjct: 65 KSSLSIGNFPYKEFDPVLKFPGIHYTYSRERLWGTCVILSTLFWSYYVLSNSELLEFEAS 124
Query: 203 NTS 195
S
Sbjct: 125 EYS 127
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 5.2
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = -1
Query: 635 LNCVCLINEINKSSDEKLKANCRNFVT---TKDVSLNSDLIDVRQSILQQCNGSNNTFNK 465
LN V L+NE NKS E L+ N +T K +L +DL + R + +Q T
Sbjct: 1229 LNMVALLNESNKSLRENLERN-EEVITELREKIETLKTDLANFRLN-KEQLESQLQT--- 1283
Query: 464 NEFSTMKRQEYTSITELKQDNHSLL 390
E + +K+ E S E K+ N +L
Sbjct: 1284 -EKAAVKKLE-NSNEEYKRHNQEIL 1306
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 620 LINEINKSSDEKLKANCRNFVTTKDVSLNSDLIDVRQSIL 501
+ + + K S EKL N NFV + +N L D R+++L
Sbjct: 4260 IFSNLTKGSFEKLTFNFSNFVKYRQYQIN--LKDFRENLL 4297
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 701 QQENLFLKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVT-TKDVSLNSDL 525
Q NLF+K L ++ + + +A+ + I +DE+ K+ FV T N +
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 421
Query: 524 IDVRQSIL 501
++ Q +L
Sbjct: 422 TEMNQRML 429
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 215 FTKSNTSNSDVTDHTSKLYKQLPPINNRF 129
F SNT+NSD +SK K L +N F
Sbjct: 314 FVVSNTANSDEPASSSKPAKPLTDLNRAF 342
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 440 QEYTSITELKQDNHSLLRPRTVVSRF 363
Q I ++D H+L+RP TV S F
Sbjct: 395 QTKNEIYSKRRDQHNLMRPETVESLF 420
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = -1
Query: 671 VQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVTTKDVSLNSDLIDVRQSILQQC 492
+ KL++ + +L L E N S+ K A+C + +T L+++L + Q
Sbjct: 94 INKLEQTMSDMNLKFEALQKEQN--SNTKTLADCTSQMTIITKKLDAELKKRYMTTKQTR 151
Query: 491 NGSNNTFNKNEFSTMKR 441
N T ++ +T KR
Sbjct: 152 TVQNQTMPRSNTTTKKR 168
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 132 IFNWVGGVSQFYEE*QRCYFTISEIITNSNYVPAYLLTVQVS 7
I +W +S+F RC FT EI + N+ +L TV+ S
Sbjct: 766 IESWTIFISRFSSVISRCSFTDFEINSILNFFFCFLHTVEPS 807
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 9.1
Identities = 25/95 (26%), Positives = 37/95 (38%)
Frame = -1
Query: 290 SVGNCDVIHRIRQYTVYYDKDYLLDFTKSNTSNSDVTDHTSKLYKQLPPINNRFLTGSEE 111
SV N ++IH ++TV+Y L F + ++ H + L P NR
Sbjct: 68 SVENFEIIHESLRFTVFY--QILSQFMQ------NICFHDFTIQDLLKPDRNRLQLILSA 119
Query: 110 FHNFMKNNKGVILPFRKS*QIQTMYLPTYLLYKCQ 6
NF K + + F Q + L TY L Q
Sbjct: 120 VINFAKLREERLQQFDDDIQKRESLLETYTLLDAQ 154
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 9.1
Identities = 21/96 (21%), Positives = 40/96 (41%)
Frame = -1
Query: 320 IEKLYDYSCQSVGNCDVIHRIRQYTVYYDKDYLLDFTKSNTSNSDVTDHTSKLYKQLPPI 141
+ +L D Q+ N V + I ++ + ++ +T D+ D K+Y ++PP
Sbjct: 10 LSRLADKYLQNSKNPSVPYTIETIVSFFQE--IIHSISPDTFQLDIDDILYKIYSKIPPE 67
Query: 140 NNRFLTGSEEFHNFMKNNKGVILPFRKS*QIQTMYL 33
N S + N + K + KS + +YL
Sbjct: 68 ENNDALFS-KLSNLVSRLKSQTVIHNKSQILYFLYL 102
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -1
Query: 761 KLIKENRFKCIHLQQLYWVAQQENLFLK--KLVQKLQEAKKEADLNCVCLINEINKSSDE 588
+L+K + +H L W + LFLK K+ ++ L V L +I ++
Sbjct: 234 QLVKTDGLAVVHTLVLNWNTIEPKLFLKLAKVALASCYISDDSSLYSVSLARDITEAIQN 293
Query: 587 KLKANCRNF 561
KL + NF
Sbjct: 294 KLNFSDVNF 302
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 524 IDVRQSILQQC--NGSNNTFNKNEFSTMKRQEYTSITELKQDNHSLLRPRTVVSRFS 360
ID+++ + + S + N S M R Y+SI E+ ++ + + ++V +FS
Sbjct: 6 IDIKRELKDESPIGQSPHLENDGRPSLMSRYSYSSIEEVSKEGYQWFKHQSVFLKFS 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,447
Number of Sequences: 5004
Number of extensions: 59411
Number of successful extensions: 200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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