Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a13
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 32 0.44
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 31 0.77
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 3.1
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 29 3.1
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 29 5.4
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 5.4
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 5.4
05_05_0293 + 23896011-23896207,23896309-23896366,23896502-238966... 28 7.2
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = -1
Query: 701 QQENLFLKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNF-VTTKDVSLNSDL 525
+++ L L +L +E K +A+L + ++NKS+ + + CR+F + + +L
Sbjct: 109 KEQTLQLARLAFHEEEEKSQAEL-----LEKLNKSNKDTIVELCRSFDIIGSKANRKEEL 163
Query: 524 IDVRQSILQQ-CNGSNNTFNKNEFSTMKRQEYTSITEL 414
+ + L++ C+G++ T + T KR+ +T L
Sbjct: 164 VIIMMEFLKEHCSGTDAT--DPDKKTKKRRRKNEVTHL 199
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -1
Query: 770 DSQKLIKENRFKCIHLQQLYWVAQQENLFLKKLVQKLQEAKKEADLNCVCLINEINKSSD 591
DS+K K+N+ LQ+ +EN LK + L E +A+L VCL + + +
Sbjct: 109 DSKKQAKDNQDN-ERLQKELESLSEENKDLKSRISSLLEQTNKAELEVVCLKEALAQQNT 167
Query: 590 EK--LKANCRNFVTTKDVSLNSDLIDVRQ 510
EK + C+ T + +L S+++ ++
Sbjct: 168 EKEAIVLQCQQ-STARLQNLKSEILHTQE 195
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 263 CELHHSYQLIDNCNRKVFLFYHSYLSQSKSIPRKILKRLCADVIKNDYLASA 418
C S +ID C + +FLF HS L+QSK P++ L ++ Y +SA
Sbjct: 1964 CSSKDSVSVIDECLKLLFLF-HS-LAQSKKCPQEATMLLLDALLMVFYSSSA 2013
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/102 (25%), Positives = 46/102 (45%)
Frame = -1
Query: 770 DSQKLIKENRFKCIHLQQLYWVAQQENLFLKKLVQKLQEAKKEADLNCVCLINEINKSSD 591
DS+ +++E + K H++ E+ FL++ V+ + E A+ N L + S +
Sbjct: 1243 DSESVVEELKLKLHHVEH-------ESYFLEESVEAISERMFAAE-NASELF--LGASKE 1292
Query: 590 EKLKANCRNFVTTKDVSLNSDLIDVRQSILQQCNGSNNTFNK 465
K N F + + DL + L + NGSN+T K
Sbjct: 1293 LIGKVNTIQFHLSASIRREGDLKSKLEQSLTESNGSNSTLEK 1334
>11_01_0787 +
6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 569 RNFVTTKDVSLNSDLIDVRQSILQQCNG 486
R F +TKD S+L++V SI+ +C G
Sbjct: 338 RAFYSTKDHECPSELVEVAASIVDRCQG 365
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -1
Query: 515 RQSILQQCNGSNNTFNKNEFSTMKRQEYTSITELKQDNHSLLRPRTVVSRFSGEYFWTVK 336
R++ Q+ + N K +F T Q YT EL ++ S L R V G+Y +
Sbjct: 406 RKAAAQEEKEAGNAAYKKDFETAI-QHYTKAMELDDEDVSYLTNRAAVYLEMGKYDECIN 464
Query: 335 DKNGKIEK 312
D + +E+
Sbjct: 465 DCDKAVER 472
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = -1
Query: 668 QKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVTTKDVSLNSDLIDVRQSILQQCN 489
++L + EADL ++ K+ + + + +DV +SD D+ + L Q N
Sbjct: 261 EELAALQAEADLPLDDILKLYTKNKVQAFSVSRESSPDGRDVFSDSDSKDLIKDPLNQAN 320
Query: 488 G----SNNTFNKNEFSTMKRQEYTSITELKQDN 402
G S++T + S+ + +Y S +E + N
Sbjct: 321 GCNDESDHTSSDEGISSEEADDYQSYSEFVKKN 353
>05_05_0293 +
23896011-23896207,23896309-23896366,23896502-23896606,
23896848-23896905,23897385-23897560,23897731-23897800,
23897908-23898203
Length = 319
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Frame = -1
Query: 527 LIDVRQSILQQCNGSNNTFNKNEFSTMKRQEYTSITELKQDNHSLLRPR----TVVSRFS 360
L+ + ++ L++ ++N K+E S + T I + + + + + T + + +
Sbjct: 82 LVSLARTELKRSAVADNLSGKSELSDARTSSGTFIRKSQDPIVAGIEEKIAAWTFLPKEN 141
Query: 359 GEYFWTVKDKNG-KIEKLYDYSCQSVGNCDVIHRIRQYTVYY-------DKDYLL--DFT 210
GE ++ K+G K E+ YDY +V HRI +Y + + L +FT
Sbjct: 142 GEDIQVLRYKHGEKYERHYDYFSDNVNTLRGGHRIATVLMYLTDVAEGGETVFPLAEEFT 201
Query: 209 KSNTSNSDVT 180
+S T+N D T
Sbjct: 202 ESGTNNEDST 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,940
Number of Sequences: 37544
Number of extensions: 303559
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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