Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a13
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-1|AAC69342.2|  356|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70718-4|CAA94672.1|  225|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81028-4|CAB02692.2|  365|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z47067-1|CAA87328.1|  776|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF101318-1|AAC69342.2|  356|Caenorhabditis elegans Hypothetical
           protein Y73C8C.4 protein.
          Length = 356

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
 Frame = -1

Query: 572 CRNFVTTKDVSLNSDLIDVRQSILQQCNGSNNTFNKNEFSTMKRQEYTSITELKQDNHSL 393
           C N++ +K   LNS L    QS   + N     +  N  +     EY++I    +   ++
Sbjct: 14  CFNYIESKSTKLNSSLNVCTQSEKAEINAKCTPYVNNLMNL--TNEYSNIQVTSEIAKNI 71

Query: 392 LRPRTVVSRFSGEYFWTVKDKNGKIEKLYDYSCQSV-----GNCDVIHRIRQYTVYYDKD 228
                 +    G++  T   KN   ++ Y+  C+ +        D + +I  Y +YY  D
Sbjct: 72  NTTCNKIPTCFGQFNCTEAQKN---KETYERKCEKIEFTYYEMMDCVSKI--YALYYRGD 126

Query: 227 YLLDF 213
           Y   F
Sbjct: 127 YFCSF 131


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
 Frame = -1

Query: 683 LKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVTTKDVSLNSDLIDVRQSI 504
           L+  + ++ EA   + +NC  L+ E  +  +  LK  C      K  S  +D I   + I
Sbjct: 448 LRNWIDRIMEAFNHSVINCFFLVGE--RHPELYLKKICDALNGLKIRS--TDSIGCTKRI 503

Query: 503 LQQCNGSNNTFN---KNEFSTMKRQEYTSITELKQDNHSLLRPRTVVSRFSGEYFWTVKD 333
           +     +  TFN   +  F  +  Q+YT    L+   H              EY WTVK 
Sbjct: 504 VNCMRSNFQTFNLLLELPFDHVPSQKYTQKLLLEDQEHV-------------EYRWTVKA 550

Query: 332 KNGKIEKLYDYSCQSV 285
           ++ K+  L   +C S+
Sbjct: 551 QSLKLNDLLASNCSSL 566


>Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -1

Query: 704 AQQENLF---LKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLK 579
           A+Q +L+    KKL+++  E K+ ++  CV L  ++  SS E LK
Sbjct: 225 AEQRHLYEQYRKKLMEEKNELKEGSETPCVSLSEKVMTSSTENLK 269


>Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -1

Query: 704 AQQENLF---LKKLVQKLQEAKKEADLNCVCLINEINKSSDEKLK 579
           A+Q +L+    KKL+++  E K+ ++  CV L  ++  SS E LK
Sbjct: 225 AEQRHLYEQYRKKLMEEKNELKEGSETPCVSLSEKVMTSSTENLK 269


>Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical
           protein F22D6.5 protein.
          Length = 775

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 677 KLVQKLQEAKKEADLNCVCLINEINKSSDEKLKANCRNFVTTKDVSLNSDLI 522
           KLV+K Q      D+NC  L  E++K ++        N   T+D  L S+LI
Sbjct: 678 KLVRKSQFKDTHFDVNCNLLYQEVDKVTERNKITVLANLKPTRD--LESELI 727


>Z70718-4|CAA94672.1|  225|Caenorhabditis elegans Hypothetical
           protein C04G2.5 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  YHFGNHNKFKLCTCLLTYCTSVKL 2
           +H  N N  K+  C+ TYC   KL
Sbjct: 144 FHAVNENDLKILCCIATYCKETKL 167


>Z81028-4|CAB02692.2|  365|Caenorhabditis elegans Hypothetical
           protein B0365.5a protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 123 WVGGVSQFYEE*QRCYFTISEIITNSNYVPAYLLT 19
           W+G   +  EE  +C +     ++ SN++P Y +T
Sbjct: 84  WIGATCKVSEEPTKCMWDDGSYLSYSNFLPGYPVT 118


>Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical
           protein R11A8.4 protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -1

Query: 308 YDYSCQSVGNCDVIHRIRQYTVYYDKDYLLDFTKSNTSNSDVTDHTSKLYKQLPPINNRF 129
           Y+   + +GNCD I R   +++         FT+  TS   + +   K   Q P  N R 
Sbjct: 359 YNADIELLGNCDDIIRDICFSLGGS------FTELITSYDSIMEQQGKTKSQKPSQNKRQ 412

Query: 128 LTGSEEFHNFMKNNK 84
           L   E+F N     K
Sbjct: 413 LISQEDFLNICMKEK 427


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 421 VMLVYSCLFIVLNSFLLKVLFD 486
           +M + SCLF++ NSF+LK + +
Sbjct: 385 LMFLASCLFLIANSFILKQIIN 406


>Z47067-1|CAA87328.1|  776|Caenorhabditis elegans Hypothetical
           protein C43C3.1 protein.
          Length = 776

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +2

Query: 266 ELHHSYQLIDNCNRKVFLFYHSYLSQSKSIPRKI----LKRLCADVIKNDYLASAL 421
           EL HS + ++  N+K+ +  H Y  + ++  R +    L++  AD I+ DY A+ L
Sbjct: 188 ELLHSIRNMEEDNKKIIMNEHKYFVRDRNADRHVFRDQLRKAIAD-IRADYEANRL 242


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
           protein F20B10.1 protein.
          Length = 1180

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 770 DSQKLIKENRFKCIHLQQLYWVAQQENLFLK 678
           +SQ+++ E+R+       +YW A    +FLK
Sbjct: 764 ESQQIVSEHRYDDGKFHAIYWEADSTGMFLK 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,159
Number of Sequences: 27780
Number of extensions: 328887
Number of successful extensions: 1070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)