Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a10
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0321 + 2535201-2535260,2535366-2535700,2535705-2535849,253...    30   1.3  
08_02_1449 - 27174451-27178005                                         29   1.8  
04_03_0204 + 12643435-12644001                                         29   1.8  
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239...    27   7.1  
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529...    27   7.1  
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735...    27   9.4  
05_07_0349 - 29448121-29448513                                         27   9.4  
05_02_0049 - 6083364-6084111,6084140-6084246                           27   9.4  

>05_01_0321 +
           2535201-2535260,2535366-2535700,2535705-2535849,
           2535946-2536140,2536243-2536530,2536849-2537035,
           2537260-2537306,2537704-2537796
          Length = 449

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 273 ILVSADKALDTVEQGAGKGNTLL 341
           I+ S+ +ALD + QGAGKG  LL
Sbjct: 185 IIFSSGEALDVLPQGAGKGQALL 207


>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = -1

Query: 367 LEGLLRVSWRRVFPLPAPCSTVS----RALSADTSITKPTSVPSM*KTGYLQTRSNTSLR 200
           L  LL   W +  PLP     ++    RAL  D     P ++ S+    YL    ++ L 
Sbjct: 551 LHTLLSPYWSKSSPLPRNIKRLNLTSLRALHNDKLNVSPKALASITHLRYLDLSHSSKLE 610

Query: 199 HHSDSSMQAEPLQAL 155
           H  DS      LQAL
Sbjct: 611 HLPDSICMLYSLQAL 625


>04_03_0204 + 12643435-12644001
          Length = 188

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 292 RLWTRSNRGRARGTPSSRTHGANPQVVTRCSTGLCRVRITC 414
           R W   + GR    P  RT GA  QVV R +T L   R TC
Sbjct: 125 RRWYDRDAGRC-AAPPGRTCGAYTQVVWRATTQLGCARRTC 164


>02_01_0335 +
           2386902-2386906,2386976-2387282,2387664-2387777,
           2390252-2390320,2390416-2390715,2390829-2390930,
           2391085-2391279,2391377-2391664,2391942-2392128,
           2393168-2393272,2393778-2393824,2393982-2394074
          Length = 603

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 246 MEGTEVGLVILVSADKALDTVEQGAGKGNTLLQDTRSKPSSRYTMQHRALSCTDN 410
           +E   + + I+ S  + LD + QGAGKG  L      K SS     +  L+C D+
Sbjct: 295 LEKRGLDVKIIYSGGQDLDVLPQGAGKGQALAY-LLKKLSSCGKPPNNTLACGDS 348


>01_04_0060 -
           15552024-15552070,15552249-15552435,15552643-15552930,
           15553027-15553221,15553330-15553431,15553588-15553842,
           15553936-15553995
          Length = 377

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 243 HMEGTEVGLVILVSADKALDTVEQGAGKGNTLLQDTRSKPSSRYTMQHRALSCTDN 410
           +ME   + + I+ S  + LD + QGAGKG  L      K SS     +  L C D+
Sbjct: 134 NMEKCGLDVKIIYSGGQDLDILPQGAGKGQALAY-LLKKLSSCGKPPNNTLVCGDS 188


>07_03_1249 -
           25172651-25172893,25173001-25173355,25173435-25173593,
           25173809-25174269,25175137-25175322,25175429-25175800
          Length = 591

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 334 PSSRTHGANPQVVTRCST 387
           PSS THGA P+ +  CS+
Sbjct: 466 PSSLTHGAPPRAICSCSS 483


>05_07_0349 - 29448121-29448513
          Length = 130

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 279 VSADKALDTVEQGAGK-GNTLLQDTRSKPSSRYTMQHRALSCTDNMHHMAFQSKHRDRSC 455
           V  D+     EQG  +   + +  +RSKP  R  +   A SCT  M H   +  H  RS 
Sbjct: 47  VEEDELTGAEEQGHDEISRSEVHGSRSKPLPRSNVTMVADSCTRRMGHQ-HELDHSARSG 105

Query: 456 RKE 464
           ++E
Sbjct: 106 KRE 108


>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 346 SWRRVFPLPAPCSTVSRALSADTSITKPTSVPSM 245
           SWR   P PA  ST S A +A  S ++P+ + ++
Sbjct: 65  SWRSSPPSPAARSTCSTARTAPASPSRPSKLTAL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,362
Number of Sequences: 37544
Number of extensions: 275800
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)