Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a10
         (532 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    31   0.98 
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ...    29   5.2  
AY052017-1|AAK93441.1|  765|Drosophila melanogaster LD47466p pro...    29   5.2  
AF317090-1|AAG38110.1|  765|Drosophila melanogaster dally-like p...    29   5.2  
AE014296-2404|AAF49722.2|  765|Drosophila melanogaster CG32146-P...    29   5.2  
AE014296-2403|AAS65005.1|  939|Drosophila melanogaster CG32146-P...    29   5.2  
AE014134-2454|AAF53369.2|  270|Drosophila melanogaster CG16880-P...    29   5.2  

>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 189   IPACRPNRCK-PCPSYCTEPAVCK 121
             +  C  NRCK PCP  C   AVC+
Sbjct: 15986 VHVCSNNRCKDPCPGLCGTDAVCR 16009



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 183   ACRPNRC-KPCPSYCTEPAVCK 121
             AC  NRC  PCP  C   AVC+
Sbjct: 11929 ACMRNRCVDPCPGICGNNAVCE 11950



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 183   ACRPNRC-KPCPSYCTEPAVC 124
             AC  ++C  PCP  C E A+C
Sbjct: 13208 ACHSSKCVNPCPGTCGENAIC 13228



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 183   ACRPNRC-KPCPSYCTEPAVCKPQR 112
             AC  N+C  PCP  C   A+C+  R
Sbjct: 17053 ACVRNKCIDPCPGTCGSNAICEVHR 17077


>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
           protein.
          Length = 1092

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 253 PSM*KTGYLQTRSNTSLRHHSDSSMQAEPLQALPVVL 143
           P+  K G + T  N+SLRH +   ++ E +Q+ P+VL
Sbjct: 78  PASSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVL 114


>AY052017-1|AAK93441.1|  765|Drosophila melanogaster LD47466p
           protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 420 CGACYPYTTKPCAASC 373
           CGAC  YT KPC   C
Sbjct: 306 CGACKGYTEKPCTNYC 321


>AF317090-1|AAG38110.1|  765|Drosophila melanogaster dally-like
           protein protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 420 CGACYPYTTKPCAASC 373
           CGAC  YT KPC   C
Sbjct: 306 CGACKGYTEKPCTNYC 321


>AE014296-2404|AAF49722.2|  765|Drosophila melanogaster CG32146-PA,
           isoform A protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 420 CGACYPYTTKPCAASC 373
           CGAC  YT KPC   C
Sbjct: 306 CGACKGYTEKPCTNYC 321


>AE014296-2403|AAS65005.1|  939|Drosophila melanogaster CG32146-PB,
           isoform B protein.
          Length = 939

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 420 CGACYPYTTKPCAASC 373
           CGAC  YT KPC   C
Sbjct: 480 CGACKGYTEKPCTNYC 495


>AE014134-2454|AAF53369.2|  270|Drosophila melanogaster CG16880-PA
           protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 204 YDTIAIPACRPNRCKPCP--SYCTEPAVCKPQR 112
           Y TI    C P   + CP  SYC EP  C  QR
Sbjct: 131 YRTILFGFCEPVCQEACPAHSYCAEPDRCHCQR 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,607,688
Number of Sequences: 53049
Number of extensions: 453259
Number of successful extensions: 1552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)