Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a08
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    28   1.8  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    27   3.2  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   3.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   4.2  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   4.2  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   4.2  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   5.5  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   7.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.6  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   9.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   9.6  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 799 FDVPHAIVCESNKILKFSVRQIKMLVQTLSTLMYTFVFLSLFLVDYLLGNGFVDMFQTIF 620
           +D+ +AI  E NK+ + + +  K        L     FL+  +  +LL NGFV+  +  F
Sbjct: 235 YDIDYAIQMEKNKLFEQATKSPKQ-----EELKQRQEFLNELISSFLLNNGFVETAKK-F 288

Query: 619 C 617
           C
Sbjct: 289 C 289


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 25/115 (21%), Positives = 49/115 (42%)
 Frame = -2

Query: 673 LVDYLLGNGFVDMFQTIFCKIACFVKKTLREEAKKTQLVGKENPISIPVIFIEILVLSLT 494
           ++   L NG + + Q+    +    + + +E  K T   G  + +SIP  F   L   L 
Sbjct: 161 MIQEYLSNGDLPLQQSTEDYVYDIYEASSKEPNKPTFAYGVIDALSIPDAFRSSLEQELV 220

Query: 493 IAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRIPTDFSYLDEEPQE 329
              ++  K     D IDE  N ++   + +    ++W+      +F+Y D+  Q+
Sbjct: 221 SETVDSDKDDPLHDEIDEDSN-AESFYQNSYPDEDEWQDSSENDEFAYSDDAEQD 274


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +3

Query: 507 TSISMNMTGMLIGFSLPTNCVFFASSRNVFF-TKQAILQNIVWNISTKPLPNK*STRNKL 683
           T I  + T  L G    T    +  SRNVFF T Q IL +I   I  +   +        
Sbjct: 140 TGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199

Query: 684 KKTKVYIKVLNVCTSILIWRTENFKILLLSHT 779
           + T  Y  V  V   +L    +NF+IL LS T
Sbjct: 200 RSTGNYAYVEVV--HLLSLSNKNFRILALSAT 229


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 509 QYFDEYDRNANRILLANQLRFFRLLSQCFLHETSYLAEYRL 631
           Q +D+    ANR L+      F L ++  L   +YL +YRL
Sbjct: 536 QTYDQTSSTANRYLIFYACVDFLLAAEVILRFFAYLPDYRL 576


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 805 DKFDVPHAIVCESNKILKFSVR 740
           DKFDVP A++   ++  K SVR
Sbjct: 485 DKFDVPFAVILGQDEFAKGSVR 506


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 34  HLLRPHPTRIDY*TRYFSICPKIDYPYRCD*IRL-SIYHQSDPVSILGHL 180
           H +  +P+ +D    Y  +CP  +Y Y  D +R  S+  QS P   L  L
Sbjct: 417 HEVVSNPSTLDDDYNYMFVCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQL 466


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 514 ILVLSLTIAFLNKYKKYRAKDRIDELLNESKE 419
           I ++  T+  LN +KKYR+ +RI  L     E
Sbjct: 152 ISLMQATLQLLNFFKKYRSVERIASLSRSISE 183


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 391 EKWRLRRIPTDFSYLDEEPQEIKPLKLEVPILHMAIIDTL 272
           EKW L+ I +   YL+ + +       E+P L  AI+D +
Sbjct: 603 EKWALKVIDSILPYLEAKDKVFMIFMSELPELTDAIVDKI 642


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -1

Query: 416  HTSDKRVSREMATA---EDTYRFFLLGRRTPRNQ 324
            HT++    R+ +T+   E+ + F L+G++ PRN+
Sbjct: 1063 HTTEPSERRDSSTSSHFEEHFVFSLMGKKVPRNK 1096


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 400 EFLEKWRLRRIPTDFSYLDEEPQEIKPL 317
           EF+ +W  R+IP    + D+ P    PL
Sbjct: 358 EFIGEWYPRKIPNPDYFDDDHPSHFGPL 385


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 481 NKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLR-----RIPTDFSYLDEEPQEIKPL 317
           +K +  R + RI++   ESK   ++ ++   +W+ R      IP  F Y D+   EI+  
Sbjct: 8   SKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKILAEIEEQ 67

Query: 316 K 314
           K
Sbjct: 68  K 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,227
Number of Sequences: 5004
Number of extensions: 72052
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)