Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a06
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 31 0.26
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 30 0.34
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 30 0.45
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 3.2
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.2
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 4.2
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 5.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 7.3
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 7.3
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 26 7.3
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 9.7
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 9.7
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 25 9.7
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 9.7
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 30.7 bits (66), Expect = 0.26
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Frame = -1
Query: 369 VCIDTKVNDYLDTIDEIDNADTTISIDTEEILNDND-----SDGLVVNKMLGQEN--VLG 211
+C+D ++LD + + D I + LN ++ S ++ KM G+ LG
Sbjct: 862 LCLDNLTQEFLDPLLDSIMPDLLICLWNHSRLNQSNNQLHQSAVRILGKMGGRNRQIYLG 921
Query: 210 TFDNDFSQNEN--------DQGVFESSSGSHNR-ITDSCSKCNSQS 100
TF DF Q+EN QG ++ S H++ + SC+ N+Q+
Sbjct: 922 TFGFDFLQDENIFPSIQFSFQGSSQNFSLEHSKFLMSSCAVLNNQN 967
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 30.3 bits (65), Expect = 0.34
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 577 YDYLLRSERLETENISTAILYRISCRIQYAH 669
YD++ R +RL+ E + I++++ C IQY H
Sbjct: 111 YDWVAREKRLD-EKTTCRIMWQLCCAIQYLH 140
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.9 bits (64), Expect = 0.45
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = -1
Query: 318 DNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESS-SGSH 142
D+ + S D++ N +DS+ + E+ + D+D + + +D SS G+
Sbjct: 260 DSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNS 319
Query: 141 NRITDSCSKCNSQSVAVSRGSEKTFKIPSKEEISV 37
N T + + ++QS S SE++ + ++ +
Sbjct: 320 NTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKI 354
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 318 DNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHN 139
D+ + S D++ + +DS+ ++ + + +++ S +ND S S S +
Sbjct: 134 DSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESES 193
Query: 138 RITD---SCSKCNSQSVAVSRGSEKTFKIPSKEEIS 40
D S S +S+S + S GS+ + S E S
Sbjct: 194 SSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESES 229
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = -1
Query: 318 DNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHN 139
DN ++ S D+E + DSD + E+ + D+D S N +D +SSS S +
Sbjct: 233 DNDSSSSSSDSESESSSEDSDS--SSSSSDSESESSSKDSDSSSNSSD-SEDDSSSDSSD 289
Query: 138 RITDSCSKCNSQSVAVSRGSEKT 70
++S S+ +S S + S S+ +
Sbjct: 290 SESESSSE-DSDSTSSSSDSDSS 311
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 318 DNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHN 139
D+ + S D++ + +DS+ ++ + + +++ S +ND S S S +
Sbjct: 188 DSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESES 247
Query: 138 RITD---SCSKCNSQSVAVSRGSEKTFKIPSKEEIS 40
D S S +S+S + S+ S+ + E+ S
Sbjct: 248 SSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDS 283
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 330 IDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQ-ENVLGTFDNDFSQNENDQGVFESS 154
I E D DTT + +++ D++ + + G+ EN L + + ++ SS
Sbjct: 43 IQEHDPVDTTNVLVADDL--DSNFEPFSITDDYGKYENTLVSHSSTILNEPYNESPSSSS 100
Query: 153 SGSHNRITDSCSKCNSQSVAVS 88
S S +R T S+ +SQS+ ++
Sbjct: 101 SDSSSRSTSPFSQLSSQSLRLN 122
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 4.2
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = -1
Query: 336 DTIDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQNE---NDQGV 166
D++++I+N T EE+ D D++ + NK + T +D +NE +
Sbjct: 276 DSLNDIENLSTLTFRSDEELEFDFDTNNINNNKSGDSLEMSTTIPSD-EENEDFTSKVDA 334
Query: 165 FESSSGSHNRITDSCSKCNSQSVAVSRGSEKTFK 64
E SGS DS + S + S SE +F+
Sbjct: 335 MEIHSGSLPLNIDSSPIFTNHSPSSSLSSESSFE 368
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 187 LTKVIVKSAQYVFLAQHFIDNQT 255
L +++ K QYV L +H++DN +
Sbjct: 48 LVEILQKGLQYVELEKHYVDNHS 70
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -1
Query: 240 KMLGQENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSR 85
K+ Q+N L D+ FSQ E + E+ + + N T++ S+ N + A+S+
Sbjct: 367 KLSHQQNFLDDIDDFFSQCETVKNELENVTTTPNS-TEAFSEINEYASALSK 417
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 569 EVNMIICFEANGLKPKTSLPLY 634
++N+ +C E +GL+ TS+PL+
Sbjct: 35 KINIYLCSEVHGLQFFTSIPLF 56
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 618 VFGFKPFASKQIIILTSKGGDISFENS 538
VFGF P + Q+I S+ G I ENS
Sbjct: 174 VFGFPPELTNQVIAEFSRFGTIISENS 200
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 759 LITQAFQV---TSRRLSPNRTASERSTRMKRSKMSILNPTRDPIQYSGRDVFGFK 604
L+ +A+ V SRR +R ++ S + ++S S NP G FGF+
Sbjct: 50 LVNEAYYVLSDNSRRAQYDRESASSSAKPRQSFFSRTNPQPQSQSQQGGPSFGFR 104
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 388 YYLKIISLQIRL--RVIIKNRFVDFIE*FVDQIDYVFVSFLIDIQFIIRFSTAVFERYIS 561
YY ++ + L V + F+ FIE FV D+++ + L D + ++ + R++
Sbjct: 13 YYTPVLPGEQELDSNVSHEKNFIQFIEEFVIDNDFIYRTQLRDNLVVKQYMLNIDLRHLI 72
Query: 562 PLRSQYDYLLRSERLETENISTAILYRISCRIQY 663
+LL S+ + + + + ++ R+ Y
Sbjct: 73 SYNEDLAHLLLSQPTDILPLFESAVTTVAKRLLY 106
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/77 (22%), Positives = 29/77 (37%)
Frame = -1
Query: 645 DPIQYSGRDVFGFKPFASKQIIILTSKGGDISFENSGRKSNNKLNIDKETYKYIIDLIDE 466
D + SGR F + ++ +S ++ + + + IID+
Sbjct: 513 DAVYVSGRSP-SFAASRPSSVDFMSQSTDSLSKNDTTASNGSMTPSSSQNNSVIIDIPRS 571
Query: 465 LFDKVDEAILDNYAETD 415
FD E L+N AE D
Sbjct: 572 HFDNAGEVCLENLAEPD 588
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 571 SQYDYLLRSERLETENISTAILYRISCRIQYAHFGSFHARA 693
S +YL+ + + + IS YR+ I + FG + ARA
Sbjct: 202 SNIEYLVSPDSVASVKISDTFFYRLPRFIVWNAFGRWFARA 242
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 478 IDYVFVSFLIDIQFIIRFSTAVFERYISPLRSQYD 582
+ Y+F S L+D +++ RF T+ ++ PL Q D
Sbjct: 310 LSYMFFSKLLDSRYVQRFVTSKRKQPTLPLALQED 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,153
Number of Sequences: 5004
Number of extensions: 64280
Number of successful extensions: 282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -