Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a06
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0743 - 5534743-5534985,5535075-5535172,5535286-5535429,553... 32 0.47
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 30 1.9
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 2.5
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 30 2.5
03_05_0503 - 24952770-24953846,24953961-24954641,24954730-249548... 30 2.5
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 29 3.3
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 3.3
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 29 3.3
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 29 3.3
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 29 5.8
12_01_0102 - 788403-788937,789051-789164,789323-789687 28 7.7
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 28 7.7
04_03_0893 - 20602008-20602361,20602455-20602604,20602723-206028... 28 7.7
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 7.7
>06_01_0743 -
5534743-5534985,5535075-5535172,5535286-5535429,
5535594-5535643,5535733-5535787,5536595-5536686,
5536758-5536806,5536883-5537079,5537160-5537302,
5537625-5537777,5537848-5537896,5537974-5538071,
5538172-5538327,5538434-5538791,5538873-5538943,
5539134-5539217,5539307-5539468,5539534-5539677,
5539769-5540004,5540990-5541374
Length = 988
Score = 32.3 bits (70), Expect = 0.47
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = -1
Query: 318 DNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHN 139
DN +I+ +E +D+D G K G V G FD + +Q + D+ + G +
Sbjct: 71 DNFIDDSAIEDDEEDDDDDDGGGRPKKKGGGGGVRGFFDEE-AQVDEDEEEEDDGEGEDD 129
Query: 138 RITDSCSKCNSQSVAVSRGSEKTFKIPSK-EEISVESLLKCLRERNA 1
I D+ + + V RGS IP + EE ++ + + +RER A
Sbjct: 130 FINDAGADLPDEDVV--RGSRHR-SIPMRDEEEDIDEIERQVRERYA 173
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Frame = -1
Query: 738 VTSRRLSPNRTASERSTRMKRSKMSILNPTRDPIQYSGR--------DVFGFKPFASKQI 583
V RL T E+ ++R K+S+ N + S + D+F P + K
Sbjct: 2278 VNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASTPASRKAS 2337
Query: 582 IILTSKGGDISFENSGRKSNNKLNIDKETYKYIIDLIDELFDK 454
++ +S GGD S ++ G+ L K I++ +DEL+D+
Sbjct: 2338 VLPSSSGGDQSKDSKGKSGGKGL-------KSILNGLDELWDQ 2373
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.9 bits (64), Expect = 2.5
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Frame = -1
Query: 396 EIIAFPGDVVCIDTKVNDYLDTIDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENV 217
E+ ++ + K+N+ T ++NA + + + E + N S L++ ++ + N
Sbjct: 360 EVQRLTKEIQMANEKLNELKQTKVNLENAVSELKKEVENLTEQNRSSELLIQELRDEINS 419
Query: 216 LGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSV-AVSRGSEKTFKI-PSKEEI 43
L N+ QNE S+ N D+ + QSV VS + K+ P EEI
Sbjct: 420 LKDSKNEL-QNEIQS--LRSTISQLNTEKDATLFQHQQSVERVSDLESQLLKLQPELEEI 476
Query: 42 --SVESLLKCLRER 7
V+ L++ L ++
Sbjct: 477 EQKVQMLMQDLEQK 490
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 276 LNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESSSG 148
L D DSD + ++K L +EN L N FS ++++ + + G
Sbjct: 793 LEDEDSDSVKMDKRLSEENHLMGASNGFSDDDSNFKLHDKRKG 835
>03_05_0503 -
24952770-24953846,24953961-24954641,24954730-24954882,
24955041-24955043
Length = 637
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 556 ISPLRSQYDYLLRSERLETENISTAILYR 642
I P++SQ+D L+R LE N+ ++YR
Sbjct: 358 IMPIQSQFDSLIREGSLEWRNLCENLMYR 386
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = -1
Query: 441 ILDNYAETDLERNDFEIIAFPGDVVCIDT---KVNDYLDTIDEIDNADTTISIDTEEILN 271
I++N + L ++D + I G V DT K +D L +D+I N T + ++ IL
Sbjct: 869 IVENKHSSILSKSDEQGITSTGVVCSKDTCVVKASDPLIPMDKIKNDSTDGACESPLILV 928
Query: 270 DNDSDGLVVNKMLGQENVLGTFDNDF---SQNENDQGVFESSSGSHNRITDSCSKCNSQS 100
+ND++ ++L T +DF + + + + ++ +S + +S
Sbjct: 929 NNDNEMSTKPEVLSIPRASKTCGSDFQDIAPTSSSEDLPPEEVQYEQKVVESDGNISCKS 988
Query: 99 VAVSRGSE 76
A + SE
Sbjct: 989 AAAIQASE 996
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = -1
Query: 360 DTKVNDYLDTID-EIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDNDFSQN 184
D+ + D+ D ++ D+ D +E ++D D L + + G + +D +
Sbjct: 76 DSGAEELSDSDDASLEGGDSGDEEDDDEEEEEDDDDPLADDFLAGSSDDESAEGDDSGVD 135
Query: 183 ENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKT-FKIPSKEEISVESL 28
++ E+ S + + + + + ++ SE F++P+KEE+ E+L
Sbjct: 136 SDESDDLEAKSRAIDEAKGKAEEEAEEELKLNIRSESDEFRLPTKEELEEEAL 188
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 29.5 bits (63), Expect = 3.3
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Frame = -1
Query: 375 DVVCIDTKVNDYLDTIDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFDND 196
++ + K+N+ T ++NA + + + E + N S L++ ++ + N L N+
Sbjct: 587 EIQMANEKLNELKQTKVNLENAVSELKKEVESLTEQNRSSELLIQELRDEINSLTDSRNE 646
Query: 195 FSQNENDQGVFESSSGSHNRITDSCSKCNSQSV-AVSRGSEKTFKI-PSKEEI--SVESL 28
QNE S+ N D+ + QSV VS + K+ P EEI V+ L
Sbjct: 647 L-QNEIQS--LRSTISQLNTEKDAALFQHQQSVERVSDLESQLLKLQPELEEIEQKVQML 703
Query: 27 LKCLRER 7
++ L ++
Sbjct: 704 MQDLEQK 710
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = -1
Query: 612 GFKPFASKQIIILTSKGGDISFENSGRKSNNKLNIDKETYKYIIDLIDELFDKVDEAILD 433
GFK A+ +++ + D F++ + N L DKET KY+I+ + F +V E I D
Sbjct: 346 GFKSLATGTDLVV-AVDDDGFFKDKISEFNGLLVTDKETNKYVINAVKCRFIRV-ERIRD 403
Query: 432 NYAETDLE 409
E + E
Sbjct: 404 QLLECNKE 411
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 375 DVVCIDTKVNDYLDTIDEIDNADTTISIDTEEI 277
DV ID++ N +DT + + DTT SI+ E+
Sbjct: 320 DVQTIDSQSNSRVDTFNSNTSEDTTKSIEVSEV 352
>12_01_0102 - 788403-788937,789051-789164,789323-789687
Length = 337
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -1
Query: 270 DNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAV 91
D+DSD ++ KM+ QE + F+ + G H ++ C+S S A+
Sbjct: 228 DDDSDDTILTKMIKQEQQAAWLPSPPPDLTTISNNFDETPGLH--VSQEVPPCSSNSSAI 285
Query: 90 SRGSEK 73
S +++
Sbjct: 286 SHYADE 291
>07_03_1777 + 29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = -1
Query: 486 IIDLIDELFDKVDEAILDNYAETDLERNDFEIIAFPGDVVCIDTKVNDYLDTIDEIDNAD 307
++ L+D DKVD+A + +++ ++ + V + V +D +D+I +
Sbjct: 801 LLSLVDMWIDKVDDANV-------IQQKEYAMALS----VILTLHVPQVIDKLDDILSVC 849
Query: 306 TTISIDTEEILNDNDSDG-LVVNKMLGQEN 220
TT+ + E+ ++D+ G + + LG +N
Sbjct: 850 TTVIMGGREVKTEDDTSGDITSSSWLGNDN 879
>04_03_0893 -
20602008-20602361,20602455-20602604,20602723-20602835,
20603105-20603377,20603746-20603886,20604638-20604974
Length = 455
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 502 LIDIQFIIRFSTAVFERYISPLRSQYDYLLRSERLETENISTAILYRISCRIQYAH 669
L+ + + S A F R+I ++++YDY + L T ++ YR+ IQ AH
Sbjct: 151 LLAVFVFLLASAATFSRFIPEIKARYDYGVTIFIL-TFSLVAVSSYRVEELIQLAH 205
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 351 VNDYLDTIDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFD 202
+ L +D + A T I ++TE+ NDS + + + N LG D
Sbjct: 215 IESLLPVLDNFERAKTQIKVETEQETKINDSYQSIYKQFIDILNSLGVED 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,566
Number of Sequences: 37544
Number of extensions: 360122
Number of successful extensions: 1221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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