Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a06
(813 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L00635-1|AAA35854.1| 437|Homo sapiens farnesyl-protein transfer... 35 0.40
BC020232-1|AAH20232.1| 437|Homo sapiens farnesyltransferase, CA... 35 0.40
BC032762-1|AAH32762.1| 571|Homo sapiens OPTN protein protein. 31 3.7
AL355355-6|CAI16550.1| 571|Homo sapiens optineurin protein. 31 3.7
BX537849-1|CAD97857.1| 1626|Homo sapiens hypothetical protein pr... 31 6.5
AY362728-1|AAR13367.1| 2677|Homo sapiens ataxia/oculomotor aprax... 31 6.5
AL353701-2|CAM14151.1| 2677|Homo sapiens senataxin protein. 31 6.5
AL159997-2|CAI40854.1| 2677|Homo sapiens senataxin protein. 31 6.5
AB014525-1|BAA31600.2| 2663|Homo sapiens KIAA0625 protein protein. 31 6.5
>L00635-1|AAA35854.1| 437|Homo sapiens farnesyl-protein transferase
beta-subunit protein.
Length = 437
Score = 34.7 bits (76), Expect = 0.40
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 775 ASRGIFNYPSVPSDEPTFISQSYSIRKKHAHETIQNEHTESDT 647
AS F Y PS P + YS+R +HA E +Q++ E+ T
Sbjct: 2 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHARERLQDDSVETVT 44
>BC020232-1|AAH20232.1| 437|Homo sapiens farnesyltransferase, CAAX
box, beta protein.
Length = 437
Score = 34.7 bits (76), Expect = 0.40
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 775 ASRGIFNYPSVPSDEPTFISQSYSIRKKHAHETIQNEHTESDT 647
AS F Y PS P + YS+R +HA E +Q++ E+ T
Sbjct: 2 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHARERLQDDSVETVT 44
>BC032762-1|AAH32762.1| 571|Homo sapiens OPTN protein protein.
Length = 571
Score = 31.5 bits (68), Expect = 3.7
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -1
Query: 249 VVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKT 70
+V+++ + N G+ ++ F + +G E GS I S + S SR ++
Sbjct: 160 IVSELQLKLNSSGSSEDSFVEIRMAEGEAE---GSVKEIKHSPGPTRTVSTGTSRSADGA 216
Query: 69 FKIPSKEEISVESLLKCLRERN 4
EE++V LL CLRE N
Sbjct: 217 KNYFEHEELTVSQLLLCLREGN 238
>AL355355-6|CAI16550.1| 571|Homo sapiens optineurin protein.
Length = 571
Score = 31.5 bits (68), Expect = 3.7
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -1
Query: 249 VVNKMLGQENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKT 70
+V+++ + N G+ ++ F + +G E GS I S + S SR ++
Sbjct: 160 IVSELQLKLNSSGSSEDSFVEIRMAEGEAE---GSVKEIKHSPGPTRTVSTGTSRSADGA 216
Query: 69 FKIPSKEEISVESLLKCLRERN 4
EE++V LL CLRE N
Sbjct: 217 KNYFEHEELTVSQLLLCLREGN 238
>BX537849-1|CAD97857.1| 1626|Homo sapiens hypothetical protein
protein.
Length = 1626
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -1
Query: 228 QENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKTFKIPSKE 49
Q++VL DN + N+Q + + + SC K +S+++ R +E KI +++
Sbjct: 653 QDSVLIKADNTIEGDNNEQNYIKDVKLEDHLLAGSCLKQSSKNIFTER-AEDQIKISTRK 711
Query: 48 EISVESL 28
+ SV+ +
Sbjct: 712 QKSVKEI 718
>AY362728-1|AAR13367.1| 2677|Homo sapiens ataxia/oculomotor apraxia
protein 2 protein.
Length = 2677
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -1
Query: 228 QENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKTFKIPSKE 49
Q++VL DN + N+Q + + + SC K +S+++ R +E KI +++
Sbjct: 653 QDSVLIKADNTIEGDNNEQNYIKDVKLEDHLLAGSCLKQSSKNIFTER-AEDQIKISTRK 711
Query: 48 EISVESL 28
+ SV+ +
Sbjct: 712 QKSVKEI 718
>AL353701-2|CAM14151.1| 2677|Homo sapiens senataxin protein.
Length = 2677
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -1
Query: 228 QENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKTFKIPSKE 49
Q++VL DN + N+Q + + + SC K +S+++ R +E KI +++
Sbjct: 653 QDSVLIKADNTIEGDNNEQNYIKDVKLEDHLLAGSCLKQSSKNIFTER-AEDQIKISTRK 711
Query: 48 EISVESL 28
+ SV+ +
Sbjct: 712 QKSVKEI 718
>AL159997-2|CAI40854.1| 2677|Homo sapiens senataxin protein.
Length = 2677
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -1
Query: 228 QENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKTFKIPSKE 49
Q++VL DN + N+Q + + + SC K +S+++ R +E KI +++
Sbjct: 653 QDSVLIKADNTIEGDNNEQNYIKDVKLEDHLLAGSCLKQSSKNIFTER-AEDQIKISTRK 711
Query: 48 EISVESL 28
+ SV+ +
Sbjct: 712 QKSVKEI 718
>AB014525-1|BAA31600.2| 2663|Homo sapiens KIAA0625 protein protein.
Length = 2663
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -1
Query: 228 QENVLGTFDNDFSQNENDQGVFESSSGSHNRITDSCSKCNSQSVAVSRGSEKTFKIPSKE 49
Q++VL DN + N+Q + + + SC K +S+++ R +E KI +++
Sbjct: 639 QDSVLIKADNTIEGDNNEQNYIKDVKLEDHLLAGSCLKQSSKNIFTER-AEDQIKISTRK 697
Query: 48 EISVESL 28
+ SV+ +
Sbjct: 698 QKSVKEI 704
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,249,539
Number of Sequences: 237096
Number of extensions: 1886287
Number of successful extensions: 6132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6113
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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