Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a06
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81536-10|CAB04361.1| 340|Caenorhabditis elegans Hypothetical p... 36 0.046
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 33 0.32
AL117195-9|CAB55016.2| 710|Caenorhabditis elegans Hypothetical ... 32 0.42
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 32 0.42
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 32 0.56
Z30423-9|CAA83012.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.74
AY071926-1|AAL61544.1| 385|Caenorhabditis elegans RNA interfere... 31 0.74
AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical ... 31 1.3
AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical ... 31 1.3
Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical p... 30 2.3
Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF005207-1|AAB61750.1| 73|Caenorhabditis elegans DAF-3 protein. 30 2.3
U97000-1|AAK68340.1| 115|Caenorhabditis elegans Hypothetical pr... 29 3.0
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 29 4.0
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 29 4.0
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 29 5.2
U40424-1|AAA81456.2| 461|Caenorhabditis elegans Twik family of ... 28 6.9
AF083650-1|AAC32861.1| 461|Caenorhabditis elegans potassium cha... 28 6.9
Z81477-6|CAB03930.1| 176|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 28 9.1
AY204199-1|AAO39200.1| 360|Caenorhabditis elegans nuclear recep... 28 9.1
AL022288-6|CAA18368.1| 341|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z81536-10|CAB04361.1| 340|Caenorhabditis elegans Hypothetical
protein F40D4.13 protein.
Length = 340
Score = 35.5 bits (78), Expect = 0.046
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = -1
Query: 459 DKVDEAILDNYAETDLERNDFEIIAFPGDVVCIDTKVNDYLDTIDEIDNADTTISIDTEE 280
D +D+A D ETD E E + G++ + T+ ND L I+E D+ D I+ T E
Sbjct: 4 DPIDQAWSDFEKETDKEAETVEEVGDEGEISPLKTQENDEL--IEEDDDDDIIITKVTGE 61
Query: 279 ILNDNDSDGLVVNKMLGQEN 220
+ + +GL+ + Q+N
Sbjct: 62 KADKGNLEGLLA--QIAQQN 79
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = -1
Query: 513 NIDKETYKYIIDLIDELFDKVDEAILDNYAETDLERNDFEIIAFPGDVVCIDTKVNDYLD 334
N D+ +KY D+ +KVD +L+N +E + + D +I P + +D K +LD
Sbjct: 661 NKDEARHKYRADVCKVEPEKVDGNLLNNESEPVVVKQDVKITEEPVPMKRLDEKA--FLD 718
Query: 333 TIDEI 319
ID++
Sbjct: 719 KIDQV 723
>AL117195-9|CAB55016.2| 710|Caenorhabditis elegans Hypothetical
protein Y57A10A.13 protein.
Length = 710
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = -1
Query: 381 PGDVVCIDTKVNDYLDTIDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENVLGTFD 202
P +VVC+ + D +D I +++N D + L DN++ + + Q N T D
Sbjct: 541 PNNVVCVGKLIMDLMDEIGKLENCD-DFRKEWLPHLTDNETSSAANSSVEEQAN--ETID 597
Query: 201 NDFSQNENDQG 169
+ S +E D G
Sbjct: 598 TNESMDEGDGG 608
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -1
Query: 579 ILTSKGGDISFENSGRKSNNKLNIDKETYKYIIDLIDELFDKVDEAILDNYAETDLERND 400
I S+G + + S S +L+ D+E + +L DE+ D DEA L N +E+DL+ D
Sbjct: 102 IQDSEGSEDGSDGSDGGSEEELDDDEEELEDE-ELEDEMIDDEDEADLFNLSESDLKTLD 160
Query: 399 FEI 391
++
Sbjct: 161 ADL 163
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 503 LSIFNLLLDFRPLFSNDISPPFEVNMIICFEANGLK---PKTSLP 628
L++ N+ +F+P+ + D PP + N + F GLK PKT +P
Sbjct: 64 LNVGNMANEFKPIITLDTKPPRDANKSLAFN-GGLKLITPKTEVP 107
>Z30423-9|CAA83012.1| 385|Caenorhabditis elegans Hypothetical
protein T20G5.11 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.74
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Frame = -1
Query: 429 YAETDLERNDFEIIAFPGDVVCIDTKVNDYLDTIDEIDNADTTISIDTEEILNDNDSDGL 250
Y +E+ EI PG T + L ID+I + + T + + DND+D
Sbjct: 100 YLRKVVEKGKHEIFFIPG------TTKEEALSNIDQISDKAEELKRSTSDAVQDNDNDDS 153
Query: 249 VVNK------MLGQENVLGTFDNDFSQNENDQGVFESSSGSH-NRITDSCSKCNSQSVAV 91
+ + EN +G +++ ++E S R C+ CN ++ +
Sbjct: 154 IPTSAEFPPGISPTENWVGKLQEKSQKSKLQAPIYEDSKNERTERFLVICTMCNQKTRGI 213
Query: 90 SRGSEKTFK 64
R +K K
Sbjct: 214 -RSKKKDAK 221
>AY071926-1|AAL61544.1| 385|Caenorhabditis elegans RNA interference
promoting factor protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.74
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Frame = -1
Query: 429 YAETDLERNDFEIIAFPGDVVCIDTKVNDYLDTIDEIDNADTTISIDTEEILNDNDSDGL 250
Y +E+ EI PG T + L ID+I + + T + + DND+D
Sbjct: 100 YLRKVVEKGKHEIFFIPG------TTKEEALSNIDQISDKAEELKRSTSDAVQDNDNDDS 153
Query: 249 VVNK------MLGQENVLGTFDNDFSQNENDQGVFESSSGSH-NRITDSCSKCNSQSVAV 91
+ + EN +G +++ ++E S R C+ CN ++ +
Sbjct: 154 IPTSAEFPPGISPTENWVGKLQEKSQKSKLQAPIYEDSKNERTERFLVICTMCNQKTRGI 213
Query: 90 SRGSEKTFK 64
R +K K
Sbjct: 214 -RSKKKDAK 221
>AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical
protein F59E12.6b protein.
Length = 452
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 58 RYFERLF*TSRHSDALGITLRTTIGD 135
+ F+R+F + RH+D+LG+T+ +G+
Sbjct: 173 KMFDRIFPSFRHNDSLGVTVNAQVGN 198
>AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical
protein F59E12.6a protein.
Length = 499
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 58 RYFERLF*TSRHSDALGITLRTTIGD 135
+ F+R+F + RH+D+LG+T+ +G+
Sbjct: 220 KMFDRIFPSFRHNDSLGVTVNAQVGN 245
>Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = -1
Query: 360 DTKVNDYLDTIDEIDNADTTISIDTEEI---LNDNDSDGLVVNKMLGQENVLGTFDNDFS 190
D + + +D I E +N + ++ E+ +D+D D L+ LG+ NV+G+ + S
Sbjct: 80 DHEKDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQ--LGRLNVIGSIQSSSS 137
Query: 189 QN--ENDQGVFESSSGS 145
QN EN ++ + + S
Sbjct: 138 QNSHENYDNLYHTDNSS 154
>Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = -1
Query: 360 DTKVNDYLDTIDEIDNADTTISIDTEEI---LNDNDSDGLVVNKMLGQENVLGTFDNDFS 190
D + + +D I E +N + ++ E+ +D+D D L+ LG+ NV+G+ + S
Sbjct: 80 DHEKDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQ--LGRLNVIGSIQSSSS 137
Query: 189 QN--ENDQGVFESSSGS 145
QN EN ++ + + S
Sbjct: 138 QNSHENYDNLYHTDNSS 154
>AF005207-1|AAB61750.1| 73|Caenorhabditis elegans DAF-3 protein.
Length = 73
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 515 NLLLDFRPLFSNDISPPFEVNMIICFEANGLK---PKTSLP 628
N+ +F+P+ + D PP + N + F GLK PKT +P
Sbjct: 2 NMANEFKPIITLDTKPPRDANKSLAFN-GGLKLITPKTEVP 41
>U97000-1|AAK68340.1| 115|Caenorhabditis elegans Hypothetical
protein F21F8.5 protein.
Length = 115
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 441 ILDNYAETDLERNDFEIIAFPGDVVCIDTKVNDYLDTIDE--IDNADTTISIDTEEILND 268
+LDNY + L D + PG +V +DT VN Y +E I T++ +I N
Sbjct: 32 MLDNYMKR-LNLTDIHF-SDPGGIVKVDTVVNKYQPLTEEEIIRKMKKTVNDTAYDIANG 89
Query: 267 NDSD 256
D D
Sbjct: 90 KDPD 93
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 29.1 bits (62), Expect = 4.0
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = -1
Query: 573 TSKGGDISFENSGRKSNNKLNIDKETYKYI-IDLIDELFDKVDEAILDNYAE-TDLERND 400
T+ ++S R+S N+ ET + + I EL D D+ +L E +D + ND
Sbjct: 1696 TANDFELSEAKRLRESPNETVTSSETRQQSNVADIPELDD--DDGVLGMEHEVSDEDPND 1753
Query: 399 FEIIAFPGDVVCIDTKVNDYLDTIDEIDNADTTISI----DTEEILNDNDSDGLVVNKML 232
I DV+ ++ D +DE ++ D+ + D EEI D+D D +VV
Sbjct: 1754 NTIQEQRPDVIDLENDEEVLEDEMDEEEDDDSFGNDEEFEDEEEIPEDDDDDDVVVLSDG 1813
Query: 231 GQENVLGTFDNDFSQNENDQGV--FESSSGSHNR 136
E + + ++D G+ E S+NR
Sbjct: 1814 DDEPANDNDEESLNDIDDDDGIEEIEMVEESNNR 1847
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 29.1 bits (62), Expect = 4.0
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = -1
Query: 573 TSKGGDISFENSGRKSNNKLNIDKETYKYI-IDLIDELFDKVDEAILDNYAE-TDLERND 400
T+ ++S R+S N+ ET + + I EL D D+ +L E +D + ND
Sbjct: 1701 TANDFELSEAKRLRESPNETVTSSETRQQSNVADIPELDD--DDGVLGMEHEVSDEDPND 1758
Query: 399 FEIIAFPGDVVCIDTKVNDYLDTIDEIDNADTTISI----DTEEILNDNDSDGLVVNKML 232
I DV+ ++ D +DE ++ D+ + D EEI D+D D +VV
Sbjct: 1759 NTIQEQRPDVIDLENDEEVLEDEMDEEEDDDSFGNDEEFEDEEEIPEDDDDDDVVVLSDG 1818
Query: 231 GQENVLGTFDNDFSQNENDQGV--FESSSGSHNR 136
E + + ++D G+ E S+NR
Sbjct: 1819 DDEPANDNDEESLNDIDDDDGIEEIEMVEESNNR 1852
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/107 (21%), Positives = 46/107 (42%)
Frame = -1
Query: 534 RKSNNKLNIDKETYKYIIDLIDELFDKVDEAILDNYAETDLERNDFEIIAFPGDVVCIDT 355
R+ +L I K+ D+ID + K++E + + ++ GD+ +
Sbjct: 985 RQKACRLEIFKKLESQTEDVIDAIQMKLEEINVSQSTSRKRQVAGDDLSNLAGDLETLRR 1044
Query: 354 KVNDYLDTIDEIDNADTTISIDTEEILNDNDSDGLVVNKMLGQENVL 214
+V + LD E+ A+ ++ EE+ + D G V N + N +
Sbjct: 1045 RVVEALDRSKEVRAANADLAPQVEELSHRVDQLGGVKNSLSSVGNAI 1091
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -1
Query: 276 LNDNDSDGLVVNKMLGQENVLGTFDNDFSQNENDQG---VFESSSGSHNRITDSCSKCNS 106
L D+D DGL G ++ +D+S +++D G E S + ++ +
Sbjct: 68 LIDDDEDGLEGLSFPGSDDE--DLRDDYSDDDSDAGDHLPIEKKSAALDKQKEKIIAEGE 125
Query: 105 QSVAVSRGSEKTFKIPSKEEISVE 34
+ + ++ ++ TF++P+ EEI E
Sbjct: 126 EELQLNIANQATFELPTVEEIENE 149
>U40424-1|AAA81456.2| 461|Caenorhabditis elegans Twik family of
potassium channelsprotein 18 protein.
Length = 461
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 588 ASKRTA*NRKHLYRYTVSDLVSDSVCSFWIVSCACFFRMLYDWEINVGSSL 740
++++T N L + +S L+ +V W++ CA F L +W+ G+SL
Sbjct: 211 SAEKTENNDDDLLSFPISGLLLITV--IWVIFCAVLFTFLEEWDF--GTSL 257
>AF083650-1|AAC32861.1| 461|Caenorhabditis elegans potassium
channel subunit n2P18 protein.
Length = 461
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 588 ASKRTA*NRKHLYRYTVSDLVSDSVCSFWIVSCACFFRMLYDWEINVGSSL 740
++++T N L + +S L+ +V W++ CA F L +W+ G+SL
Sbjct: 211 SAEKTENNDDDLLSFPISGLLLITV--IWVIFCAVLFTFLEEWDF--GTSL 257
>Z81477-6|CAB03930.1| 176|Caenorhabditis elegans Hypothetical
protein C27C7.8 protein.
Length = 176
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 438 LDNYAETDLERNDFEIIAFPGDVVCIDTKVND-YLDTIDEIDNADTTI 298
L NY ET + +DFEI GD+ V+D Y D I + N+ +I
Sbjct: 129 LRNYYETQTKMDDFEIAIRIGDITLQIVTVSDIYHDFIKLLLNSGISI 176
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 309 DTTISIDTEEILNDNDSDGLVVNK 238
D ++ DT+++LN + +DG++VNK
Sbjct: 2370 DDLVNEDTKKVLNVSVTDGIIVNK 2393
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 309 DTTISIDTEEILNDNDSDGLVVNK 238
D ++ DT+++LN + +DG++VNK
Sbjct: 2370 DDLVNEDTKKVLNVSVTDGIIVNK 2393
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 309 DTTISIDTEEILNDNDSDGLVVNK 238
D ++ DT+++LN + +DG++VNK
Sbjct: 2370 DDLVNEDTKKVLNVSVTDGIIVNK 2393
>AY204199-1|AAO39200.1| 360|Caenorhabditis elegans nuclear receptor
NHR-113 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 438 LDNYAETDLERNDFEIIAFPGDVVCIDTKVND-YLDTIDEIDNADTTI 298
L NY ET + +DFEI GD+ V+D Y D I + N+ +I
Sbjct: 313 LRNYYETQTKMDDFEIAIRIGDITLQIVTVSDIYHDFIKLLLNSGISI 360
>AL022288-6|CAA18368.1| 341|Caenorhabditis elegans Hypothetical
protein ZK1025.9 protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 438 LDNYAETDLERNDFEIIAFPGDVVCIDTKVND-YLDTIDEIDNADTTI 298
L NY ET + +DFEI GD+ V+D Y D I + N+ +I
Sbjct: 294 LRNYYETQTKMDDFEIAIRIGDITLQIVTVSDIYHDFIKLLLNSGISI 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,900
Number of Sequences: 27780
Number of extensions: 349277
Number of successful extensions: 1392
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -