Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a06
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   5.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
 Frame = -1

Query: 363  IDTKVNDYLDTIDEIDNA--------DTTIS---IDTEEILNDNDSDGLVVNKMLGQENV 217
            +  K+N+YLD  D I N         D  +S     TE+IL+  D D L++N +  ++  
Sbjct: 1384 VRAKLNEYLDKADVIVNTPIMDAHFKDVKLSDFGFSTEDILDTADED-LLINNVFYEDET 1442

Query: 216  LGTFDNDFSQ 187
                D   +Q
Sbjct: 1443 SCMLDKTRAQ 1452


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 574 QYDYLLRSERLETENISTAILYRISCRIQY 663
           Q+  L   +R  T ++ST    R++C IQ+
Sbjct: 187 QFRVLGHRQRHSTIHLSTGNYSRLACEIQF 216


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 81  NLSTQRRFGNYTSNNYR 131
           +LS    + NY +NNY+
Sbjct: 84  SLSNNYNYSNYNNNNYK 100


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 81  NLSTQRRFGNYTSNNYR 131
           +LS    + NY +NNY+
Sbjct: 84  SLSNNYNYSNYNNNNYK 100


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 81  NLSTQRRFGNYTSNNYR 131
           +LS    + NY +NNY+
Sbjct: 84  SLSNNYNYSNYNNNNYK 100


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 81  NLSTQRRFGNYTSNNYR 131
           +LS    + NY +NNY+
Sbjct: 84  SLSNNYNYSNYNNNNYK 100


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 81  NLSTQRRFGNYTSNNYR 131
           +LS    + NY +NNY+
Sbjct: 84  SLSNNYNYSNYNNNNYK 100


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 81  NLSTQRRFGNYTSNNYR 131
           +LS    + NY +NNY+
Sbjct: 84  SLSNNYNYSNYNNNNYK 100


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 516 LNIDKETYKYIIDLIDEL 463
           L ID+ET+  +I  +DE+
Sbjct: 315 LVIDRETFNQLISSLDEI 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,124
Number of Sequences: 438
Number of extensions: 4483
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)