Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a05
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           31   1.3  
10_08_0445 + 17989438-17990895                                         30   1.7  
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    29   4.0  

>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
 Frame = -1

Query: 582  RNLNIEFRSIVDNF------LIRLGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPF 421
            + LN+ FR + +N+      L++L  ++ +  +  L+E       E L    AL+ E+P 
Sbjct: 735  QKLNVLFRGVEENWNAFLQSLVKLTGSLRSLSIHILDEKEHSSSLEYL----ALIAESPP 790

Query: 420  NNLKDEIAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPILM 259
              +++   K  L +L  W+P  +N     F D+  ++    E + V+ DLP L+
Sbjct: 791  LFIRNFSLKGKLQRLPPWIPSLRNVSRITFRDTGLHA----EAIGVLGDLPNLL 840


>10_08_0445 + 17989438-17990895
          Length = 485

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 363 AARKPVSIEDVWRFRPSNY*REPPRPAHQEASVSLSLSLDTALP 494
           A +KPV +ED WR  PS++  E P    + A ++L+    T  P
Sbjct: 295 AVKKPVVVEDPWRPPPSSWTIEAPADGDKWA-ITLATDFSTPKP 337


>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 429 PPRPAHQEASVSLSLSLDTALPSWIRNLPR 518
           PP+P    AS S S   D A+P+W+R LPR
Sbjct: 2   PPQPP-PAASASASAP-DPAVPAWLRGLPR 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,444,210
Number of Sequences: 37544
Number of extensions: 404924
Number of successful extensions: 1090
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)