Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a05
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    74   1e-13
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily ass...    29   4.7  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
 Frame = -1

Query: 531 LGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF- 355
           +GT V+   V +L        S + + P  L+LE+PFNNLKD +  HP+  + SW+  F 
Sbjct: 192 MGTGVSCKLVQDL--------SREQQPPCGLILESPFNNLKDAVTNHPIFTVFSWMNDFM 243

Query: 354 -KNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKGDRVVPYELAVKLQNKLVQSRKS 178
             +  ++P  +S   +  +D+ + +V   PI++LH++ D+++P    VKL   L ++ K 
Sbjct: 244 VDHIIIRPL-NSVGLTMRSDKRIRLV-SCPIIILHAEDDKILP----VKLGRALYEAAKD 297

Query: 177 SSAPFTFQTFEREHSIGHNNLCEAKHFKSAITDFL 73
           +      + F  ++ +GH  +C        I +F+
Sbjct: 298 AERDIKIREFSSDYGLGHKFICRYPELPEIIEEFV 332


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 696 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 571
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 696 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 571
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = -1

Query: 339 KPFTDSPDYSFT-TDEYLAVVPDLPILMLHSKG--DRVVPYE--LAVKLQNKLVQSRKSS 175
           +P T S ++     D+YL V P+L ++ L+  G  D + P E  L  KL N +  S K+ 
Sbjct: 72  EPVTFSTEHLLQRADQYLEVFPELQVIGLYCAGEDDNLTPEEKPLLSKLTNAVRNSEKAG 131

Query: 174 SAPFTFQTFEREHSIGHNNLCEAKHFKSAITD 79
               T        + G         F++ +TD
Sbjct: 132 QIDATLFLKLNSITAGTTRKLPLFAFEADVTD 163


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 225 ELAVKLQNKLVQSRKSSSAPFTFQTFEREHSIGHNNLCEAKHFKSAITDFL 73
           +LA K++ K V+      +  T  TFE    I H +  +  H  S  T +L
Sbjct: 64  KLAFKIREKFVEIAPDERSYNTLVTFENGKFISHQDKIKENHHSSVFTTWL 114


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 413
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 261 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 413
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 312 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 255 HSKGDRVVPYELAVKLQNK---LVQSRKSSSAPFTFQTFEREHSIGHNNLCEAKH 100
           HS+ D  +  + +V  Q +   L +  +SS  P   + FER     H  L E KH
Sbjct: 120 HSESDTNINIDFSVPCQEEVLVLYEQLQSSGVPALLRKFERVVGSFHKELSEKKH 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,281
Number of Sequences: 27780
Number of extensions: 353468
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)