Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a04
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    26   5.3  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    26   7.0  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   9.3  

>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 13  WYKHQNKLVWLSAQALTGNGNVQITI*K*CPKKFNFY 123
           W++H   L+    Q+L GN   +I I +  PK + ++
Sbjct: 27  WWRHVRMLLRRLKQSLDGNEKAKIAILEQLPKSYFYF 63


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +1

Query: 352 KSSKYFL*HSVSLRQNFSIPLGDYTLVFSISMLIKYIRSKYNIDKLKNRCMNTRISLVHF 531
           K   Y L H ++   + ++    +    S +     I S   + KL + C N   +  HF
Sbjct: 155 KQMDYALNHVLAALPDDTVTYPGHEYTKSNAKFSSTIFSTPELTKLVDFCKNHESTTGHF 214

Query: 532 TIGTRDL*HNYMC 570
           TIG     + +MC
Sbjct: 215 TIGDEKKFNPFMC 227


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 623 LE*NLINSNILHSFFTLGYLIYQTWFSDV 709
           L+ N INS I+ S  T+ + +YQ++F  V
Sbjct: 305 LDGNSINSEIIASQSTVPFPVYQSFFDKV 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,617
Number of Sequences: 5004
Number of extensions: 55115
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)