Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a04
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513           29   5.5  
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609...    28   7.3  

>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
          Length = 621

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 203 QRIE-SVLLLSIIQPIYLLDIQNLKPNINEKSSFITFKFECLTSLFVLL*LNHPSI 367
           QR E  ++ L +   IY   +  L+P I E+ + I ++   L++  + L L HPS+
Sbjct: 419 QRFEVGIIQLHLFTDIYTTSVLLLEPGIWEEKTGIVWECVMLSNYMMYLLLAHPSM 474


>07_03_1473 +
           26756338-26757583,26759067-26759472,26760867-26760930,
           26760975-26761055,26763350-26763588,26763689-26763947,
           26764359-26764538,26764937-26765092,26765174-26765350
          Length = 935

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = +2

Query: 86  LFKNNVPRNLTFTFETRNSN*QNQLNSKFKKNYAYL*HLQRIESVLLLSIIQPIYLLDIQ 265
           LF+ N  R L             QLN   K       H+   E   +L+  +P+  LD+ 
Sbjct: 788 LFRRNTLRRLISVLANDYDRDAKQLNGTHKS------HVHSKEEAEILAKFKPV--LDVS 839

Query: 266 NLKPNINEKSSFI 304
           NL PNI     +I
Sbjct: 840 NLIPNIRNAEKYI 852


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,239,060
Number of Sequences: 37544
Number of extensions: 263389
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)