Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a04
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 44  SRHRH*REMETFKLLFKNNVPRNLTFTFETRNSN*QNQLNSKFKKNYAY 190
           SR+R  RE      +  NN   +  + +    +N  N  N+ +KK   Y
Sbjct: 67  SRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYY 115


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 607 SGYYMRNQFSI*NTCNYVID 548
           SG+Y+ + +++ N  NY I+
Sbjct: 206 SGWYLNHDYNLENKLNYFIE 225


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 89  FKNNVPRNLTFTFETR 136
           FKN + RN+T   +TR
Sbjct: 70  FKNELERNITIKLDTR 85


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 565 CNYVIDPWF 539
           C +V+DPWF
Sbjct: 51  CVFVLDPWF 59


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 420 ITKRYRKVLS*RNRMLKKILG*FNYNKTNKEVKHSNLK 307
           +   Y  VLS  NRM K +   FN++  N  +  +N+K
Sbjct: 371 VKDEYMLVLS--NRMQKIVNDDFNFDDVNFRILGANVK 406


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 399 VLS*RNRMLKKILG*FNYNKTNKEVKHSNL 310
           +L+  NRM K I   FN+N  N  +  +N+
Sbjct: 381 MLALSNRMQKIINNDFNFNDVNFRILGANV 410


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 356 HPSIFFSILFR*DKTFLYLLVIIP 427
           +P IFF+I  R    F  + +I+P
Sbjct: 222 YPDIFFNITLRRKTLFYTVNLIVP 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,284
Number of Sequences: 438
Number of extensions: 4205
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)