Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a02
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 28 1.3
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 28 1.7
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 28 1.7
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 3.9
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.9
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 26 5.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.2
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 26 5.2
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 5.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.1
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 9.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.1
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 25 9.1
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.1
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +3
Query: 93 IMLTLAACPIKKS*YFCADKSIYNYKWLNQIFIFKCVWKFRNRLTVNYQRDQYFSF---* 263
I+ T C K S + +++I YK LN F +W + N NY +Y+ F
Sbjct: 167 IVFTNHVCERKHSGIYAMEEAIEEYKILNTQGDFSNIWVYSN----NYTYCKYWPFNEIL 222
Query: 264 ILNQV--EASYQNLLGY 308
L Q+ +Y NL+ Y
Sbjct: 223 SLKQIRHNQTYTNLINY 239
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 432 NLLEGNCIDNS-ENDVQCTVTETFVKTYKRTYEA 334
NLL + +DN EN+ + ETFVK K YE+
Sbjct: 508 NLLRASQVDNKVENEALMGLFETFVKIKKFEYES 541
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 101 QHNCAITSYINISKINLH 48
QH CAI S +NI KI +H
Sbjct: 487 QHACAIASLLNIEKIIIH 504
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 708 KNFPVSNRLIKTAPSVFPVPKKISHKLKYXQKKCLSAM--CEEDSGENFCQLDY 553
K P + +A S+ + KK +K+K+ C S++ CEE +F L Y
Sbjct: 128 KKKPRQSFYTDSATSIVQLSKKYRNKIKFKSVDCASSLEKCEEIGINSFPSLVY 181
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Frame = -1
Query: 597 MCEEDSGENFCQLDYSKQETSVVHQEQMFHILYVSLDAYLDGFSIPDHRDTIHQMNLLEG 418
+C DS E QL+ ++ ++V E + + L ++ S +D + +MN
Sbjct: 478 LCLSDSQEELLQLNAKLEKANIVIDE--LNSAKLKLSKQVEEES--SMKDDLTEMNQRLK 533
Query: 417 NCIDNSENDVQCTVTETFVK---TYKRTYEALKEITLLFDTLK 298
I++ EN+V +T +K T K YE K + L + LK
Sbjct: 534 EQIESYENEVNSEITSRTLKEFETLKTQYE--KNLCNLREQLK 574
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 257 ILDIKSGGGILSESFRVSNNRVISFKAS 340
ILDI GGGILSES V + AS
Sbjct: 81 ILDIGCGGGILSESMARLGASVTAVDAS 108
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 459 DHRDTIHQMNLLEGNCIDNSENDVQC 382
+H I +L EG+C N+E DV+C
Sbjct: 578 NHFLEIFNRHLTEGDCNRNTEKDVKC 603
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/59 (20%), Positives = 26/59 (44%)
Frame = -1
Query: 684 LIKTAPSVFPVPKKISHKLKYXQKKCLSAMCEEDSGENFCQLDYSKQETSVVHQEQMFH 508
+ K + FP+ + +SH ++ C++ E + +LD+ K ++ FH
Sbjct: 176 IAKASEKAFPINETLSHLANLSKQDCVANSLSEPFRLSKPKLDFLKHACTMFRGTHRFH 234
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 5.2
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Frame = -1
Query: 741 ILKKFLEESL-WKNF----PVS---NRLIKTAPSVFPVPKK---ISHKLKYXQKKCLSAM 595
+ +KFL + WK P+S L+K AP P K+ + +L K +
Sbjct: 174 VFRKFLSRHVSWKEVLHSPPISCLPKDLLK-APPADPSSKENAELYKELPIPSKTLVPRD 232
Query: 594 CEEDSGENFCQLDYSKQETSVVHQEQ--MFHILYVSLDAY 481
+D G+NF L+ + Q+ S+V QE+ +F+ + +S Y
Sbjct: 233 NYDDVGKNFLMLEDTLQQYSIVAQEESNLFNQIVLSNSKY 272
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 526 MNNTCLLF*IIELTEVFTRIFLTHC 600
+NN LLF + +L E F+ IFL C
Sbjct: 1703 LNNPHLLFTLYKLLERFSLIFLRKC 1727
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 384 IEHHFLNYLYNFLQANSSDE*YPC 455
++HH LNYL + + D+ PC
Sbjct: 596 LQHHILNYLNDCKRLQDMDKLIPC 619
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 84 YCTIMLTLAACPIKKS*YFCADKSIY 161
+C +LT+A C + + Y C K Y
Sbjct: 1284 WCVTVLTIALCLLPRFSYICLQKLFY 1309
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 366 FVKTYKRTYEALKEITLLFDTLKDSDRMP 280
++ T TY L + ++L+ + +DSD MP
Sbjct: 77 YIATGNSTYNELVKTSMLYQSGEDSDYMP 105
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 626 NXCKKNVYQQCVRKILVKTSVNSII--QNKRQVLFIKNK 516
N C+ N C+R+ L K + SI+ +NK+++L + K
Sbjct: 292 NHCELNNDSSCLREALKKFASQSIVLLKNKKKLLPLSRK 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,822
Number of Sequences: 5004
Number of extensions: 71682
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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