Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a02
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0131 - 1186129-1186242,1186640-1186720,1186843-1186993,118...    31   1.3  
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    29   4.1  
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    28   7.2  
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895...    28   9.5  
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842...    28   9.5  

>01_01_0131 -
           1186129-1186242,1186640-1186720,1186843-1186993,
           1187100-1187167,1187323-1187438,1188108-1188366
          Length = 262

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 648 KKISHKLKYXQKKCLSAMCEEDSGENFCQLDYSKQETSVVHQEQMFH 508
           K ++  L+Y  +KC+   C E  G+  C++   + +      +Q+FH
Sbjct: 94  KFLASPLQYAHRKCIQRWCNE-KGDTVCEICLQQFKPGYTAPQQLFH 139


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 188  YFQMRL-EISE*THCKLSKRPIFFILDIKSGGGILSESFRVSNNRVISFKA 337
            Y Q+ + E+ + TH K S R I+F+ D KSG  IL    R++   VISF++
Sbjct: 889  YIQISVYELMDSTHNK-SHRRIWFVDDHKSGEIILEFDGRLNKWGVISFRS 938


>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 738 LKKFLEESLWKNFPVSNRLIKTAPSVFPVPKKISHK 631
           L KF+ E   +N     RL K   S+ P PKK+ H+
Sbjct: 259 LSKFIREM--ENITTKTRLKKIRQSLQPAPKKVHHR 292


>08_01_0907 +
           8949102-8949160,8949662-8949842,8951816-8951941,
           8952082-8952092,8952237-8952360,8952447-8952546,
           8952807-8952849,8953033-8953153
          Length = 254

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = -1

Query: 348 RTYEALKEITLLFDTLKDSDRMPPPDLISKMKNIGLFDSL 229
           RT E  K  T LF      D+  PP L   MK IGL D L
Sbjct: 137 RTTEMGKP-TALFQLSDSFDKEIPPQLKQSMKKIGLLDLL 175


>02_04_0346 -
           22183145-22183264,22183877-22183966,22184140-22184220,
           22184430-22184589,22184723-22184787,22185370-22185441,
           22186163-22186327
          Length = 250

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = -1

Query: 651 PKKISHKLKYXQKKCLSAMCEEDSGENFCQLDYSKQETSVVHQEQMFHILYVSLDAYLDG 472
           P   S  LKY  ++C+   C E  G+  C++ +   +       Q+ H    +++     
Sbjct: 47  PCACSGSLKYAHRECVQRWCNE-KGDIICEICHVSYKPGYTAPPQVHHD-ETTIEISSGD 104

Query: 471 FSIPDHRDTIHQMNLL 424
           +SI  +R  +H   +L
Sbjct: 105 WSISGNRLDLHDPRIL 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,719,057
Number of Sequences: 37544
Number of extensions: 365092
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)