Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a02
         (771 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068257-1|AAC19117.1|  663|Drosophila melanogaster mutL homolog...    29   5.3  
AY089583-1|AAL90321.1|  480|Drosophila melanogaster RE11624p pro...    29   7.1  
AE014297-2656|AAF55663.2|  480|Drosophila melanogaster CG18493-P...    29   7.1  

>AF068257-1|AAC19117.1|  663|Drosophila melanogaster mutL homolog
           protein.
          Length = 663

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 618 QKKCLSAMCEEDSGENFCQLDYSKQETSVVHQEQMFHILYVSLDAYL 478
           + +C    C E +   + QLD+ +  T+V  +  M H+L+ +   YL
Sbjct: 593 ETRCFETFCRE-TARFYAQLDWREGATAVFSRWTMEHVLFPAFKKYL 638


>AY089583-1|AAL90321.1|  480|Drosophila melanogaster RE11624p
           protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 333 LKEITLLFDTLKDSDRMPPPDLISKMKNI 247
           +K++ LL  TLK+ +R PP  +++K  N+
Sbjct: 26  IKDVPLLVKTLKNLNRGPPHQVVTKRANV 54


>AE014297-2656|AAF55663.2|  480|Drosophila melanogaster CG18493-PA
           protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 333 LKEITLLFDTLKDSDRMPPPDLISKMKNI 247
           +K++ LL  TLK+ +R PP  +++K  N+
Sbjct: 26  IKDVPLLVKTLKNLNRGPPHQVVTKRANV 54


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,156,616
Number of Sequences: 53049
Number of extensions: 697035
Number of successful extensions: 1667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)