Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a02
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00034-1|AAA50639.2| 566|Caenorhabditis elegans Pim (mammalian ... 31 1.2
Z81563-3|CAB04565.1| 222|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z77663-6|CAB01207.1| 360|Caenorhabditis elegans Hypothetical pr... 29 3.7
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z78013-2|CAB01424.1| 453|Caenorhabditis elegans Hypothetical pr... 28 6.4
U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine rece... 28 6.4
Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical pr... 28 8.5
AL031632-1|CAA21004.1| 248|Caenorhabditis elegans Hypothetical ... 28 8.5
AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical ... 28 8.5
>U00034-1|AAA50639.2| 566|Caenorhabditis elegans Pim (mammalian
oncogene) relatedkinase protein 1, isoform a protein.
Length = 566
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -1
Query: 402 SENDVQCTVTETFVKTYKRTYEALKEITLLFDTLKDSDRMPPPDLISKMKNIGLFDSL 229
SEND Q + ET T + TY +++T+ + + +PPP L + ++ F+S+
Sbjct: 469 SENDHQPLIPETSSATCQSTYSNDEDVTISEKVVSPAQPLPPP-LSPRKGSLQCFESV 525
>Z81563-3|CAB04565.1| 222|Caenorhabditis elegans Hypothetical
protein K04H8.3 protein.
Length = 222
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 456 HRDTIHQMNLLEGNCIDNSENDVQCTVTETFVKTYKRTYEALKEITLLFDT 304
H T Q+NL N I +S + C +TET Y A+ + L FDT
Sbjct: 103 HGITEQQLNLRYYNFICSSHFHLDCKLTETLQICMTDRYVAVLGLPLAFDT 153
>Z77663-6|CAB01207.1| 360|Caenorhabditis elegans Hypothetical
protein F53F4.7 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 750 LFIILKKFLEESLWKNFPVSNRLIKTAP 667
LF+++ KF EESL K +P N +I AP
Sbjct: 93 LFLVMDKFSEESLRKVYPRLNIVIWLAP 120
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 438 QMNLLEGNCIDNSENDVQCTVTETFVKTYKRT-YEALKEITLLFDTLKDSDRMPPPDLIS 262
++ + +G +S+N+ C +KTY + KE+ +L+ + + +LI
Sbjct: 1847 RIRIADGEISRHSDNEKICEQAACTLKTYHNVIVDVKKELEILYSLKLEDQKKSLINLID 1906
Query: 261 KMKNIGLFDSLQ 226
K++ G+ L+
Sbjct: 1907 KVQKRGMIQDLE 1918
>Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical
protein F49B2.5 protein.
Length = 507
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 176 EPFVIIDRFICTKILRFFYRAGRQCQ 99
EP +I+ + +L F R GRQCQ
Sbjct: 306 EPILIVTELMQENLLTFLQRRGRQCQ 331
>Z78013-2|CAB01424.1| 453|Caenorhabditis elegans Hypothetical
protein F15B9.6 protein.
Length = 453
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 147 DKSIYNYKWLNQIFIFKCVWKFRNRLTVN 233
D +Y Y W N+I I C+ +F + T++
Sbjct: 323 DNDVYKYGWSNRIEIDSCILRFEHCKTLD 351
>U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 26 protein.
Length = 338
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 641 FLIN*NXCKKNVYQQCVRKILVKTSVNSII 552
+L+ K N++ C R +L+ S+NSI+
Sbjct: 46 YLVVKTLIKNNIFSNCTRALLIFCSINSIV 75
>Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical
protein R09A8.2 protein.
Length = 891
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -1
Query: 492 LDAYLDGFSIPDHRDTIHQMNLLEGNCIDNSEN-------DVQCTVTETFVKTYKRTYEA 334
+D + G S+ H+ M + +C+ + N + QC + FVK+ +R E
Sbjct: 312 IDPQMKGNSVDAHKGLQFSMTVQNSSCLSSDGNTSTDDRVNAQCFASSGFVKSERRRLEQ 371
Query: 333 LKE 325
L E
Sbjct: 372 LME 374
>AL031632-1|CAA21004.1| 248|Caenorhabditis elegans Hypothetical
protein Y32B12B.1 protein.
Length = 248
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 141 CADKSIYNYKWLNQIFIFKCVWKF 212
C IY+YK+ + +++C+W F
Sbjct: 4 CRKSVIYSYKFCRCLCVYRCLWLF 27
>AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical
protein H11E01.1 protein.
Length = 292
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -1
Query: 504 LYVSLDAYLDGFSIPDHRDTIHQMNLL----EGNCIDNSENDVQCTVT 373
LY L +++ F + HRD +H++++ + I N N ++ VT
Sbjct: 92 LYAGLRTFIEHFPVVFHRDNVHRLSISNVDHDWKFISNEMNGLEIPVT 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,656
Number of Sequences: 27780
Number of extensions: 396225
Number of successful extensions: 1107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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