Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a02
(771 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein. 24 1.4
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 24 1.8
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 24 1.8
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 24 1.8
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 23 2.4
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 2.4
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 23 3.1
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 23 4.2
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 23 4.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.6
>DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein.
Length = 152
Score = 24.2 bits (50), Expect = 1.4
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 489 DAYLDGFSIP-DHRDTIHQMNLLEGNCIDNSENDVQCTVTETF 364
D YL+ + D +D+I + + C+DN++N+ +C + F
Sbjct: 78 DVYLNDTDMDMDLKDSIRK---IIRQCVDNAKNEDKCLTAQKF 117
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 23.8 bits (49), Expect = 1.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 489 LKIHTKCET--FVLDEQHLSLVLNNRVDRSFHQNLPHTLLIDIFFAXISIYEKFSLVQET 662
L +T +T ++ DE+ L++ + D SFH+ +T D F ++I + Q+
Sbjct: 193 LDCNTNSDTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQDG 252
Query: 663 HLGLFL 680
G+ L
Sbjct: 253 ISGMAL 258
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 23.8 bits (49), Expect = 1.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 489 LKIHTKCET--FVLDEQHLSLVLNNRVDRSFHQNLPHTLLIDIFFAXISIYEKFSLVQET 662
L +T +T ++ DE+ L++ + D SFH+ +T D F ++I + Q+
Sbjct: 193 LDCNTNSDTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQDG 252
Query: 663 HLGLFL 680
G+ L
Sbjct: 253 ISGMAL 258
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 23.8 bits (49), Expect = 1.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 489 LKIHTKCET--FVLDEQHLSLVLNNRVDRSFHQNLPHTLLIDIFFAXISIYEKFSLVQET 662
L +T +T ++ DE+ L++ + D SFH+ +T D F ++I + Q+
Sbjct: 193 LDCNTNSDTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGESYTAQDG 252
Query: 663 HLGLFL 680
G+ L
Sbjct: 253 ISGMAL 258
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 627 KYXQKKCLSAMCEEDSGENFCQLD 556
KY ++AMC G++ CQ+D
Sbjct: 325 KYYGNIMVNAMCAYAKGKDACQMD 348
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 771 LSIEGDCLFIILKKFLEESLWKN 703
+S+E + +FI + KFL++ KN
Sbjct: 332 ISVESNTMFINILKFLKQKYVKN 354
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 23.0 bits (47), Expect = 3.1
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +3
Query: 501 TKCETFVLDEQHLSLVLNNRVDRSFHQNLPHTLLIDIFFAXISIYEKFSLVQETHLGLFL 680
T ++ DE+ L++ D SFH+ +T D + +++ + V+ G+ L
Sbjct: 202 TNTMVYIADEKGEGLIMYQNSDDSFHRLTSNTFDYDPRYTKLTVAGESFTVKNGIYGIAL 261
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 22.6 bits (46), Expect = 4.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 501 TKCETFVLDEQHLSLVLNNRVDRSFHQNLPHTL 599
T +++D ++ +L++ D SFH+ HTL
Sbjct: 198 TNTMVYMVDNKN-TLIIYQNADDSFHRLSSHTL 229
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 22.6 bits (46), Expect = 4.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 342 YEALKEITLLFDTLKDSDRMPPPDLISKMKNI 247
Y+ +KE+ L K++ RM PP I K I
Sbjct: 347 YDDIKEMEYLDKVFKETLRMYPPASILMRKAI 378
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 9.6
Identities = 10/43 (23%), Positives = 18/43 (41%)
Frame = -1
Query: 636 HKLKYXQKKCLSAMCEEDSGENFCQLDYSKQETSVVHQEQMFH 508
H ++ CL + S NF + S++ + H+ FH
Sbjct: 619 HSMELRTLPCL--LPRPKSENNFASQELSREGRRIFHKSDTFH 659
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 9.6
Identities = 10/43 (23%), Positives = 18/43 (41%)
Frame = -1
Query: 636 HKLKYXQKKCLSAMCEEDSGENFCQLDYSKQETSVVHQEQMFH 508
H ++ CL + S NF + S++ + H+ FH
Sbjct: 587 HSMELRTLPCL--LPRPKSENNFASQELSREGRRIFHKSDTFH 627
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,284
Number of Sequences: 438
Number of extensions: 4683
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -