Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p24
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    98   1e-21
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    93   5e-20
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    29   1.00 
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   2.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   9.3  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   9.3  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 6/211 (2%)
 Frame = -3

Query: 771 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 592
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 591 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 415
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 414 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 250
           G     R KL+E S+ +   H   A        S ED   + HFI FV    + D   YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175

Query: 249 LDGRKAFPVNHGPTSQETLLEDAAKICKEFM 157
           LDGR+  PV H     + L  +   + K ++
Sbjct: 176 LDGRQEGPVQHSEIESDLLNAEVLSVIKNYI 206


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 6/237 (2%)
 Frame = -3

Query: 768 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 589
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 588 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 409
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTL 115

Query: 408 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELD 244
               +G+ L  SE I   H   A+       +    + ED V +HFI++   +   YELD
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174

Query: 243 GRKAFPVNHGPTSQETLLEDAAKICKEFMAR-DPNEVRFTVIALVASD*LISFLSFE 76
           G +A P+NHG  ++E   E A  + +  +A  DP E+RF ++ ++  D   S L+ E
Sbjct: 175 GLQAAPINHGSCTKEEFAEKAVSVIQARIANYDPAEIRFNLM-VICKDKKASLLTRE 230


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 375 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQET 196
           S  ++    ELA +  TNT      V   ++++V  +   + L   K F   H P+S E 
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183

Query: 195 LL 190
           L+
Sbjct: 184 LI 185


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 269 KMEHCMS*MAVKLFLSIMAQLHRKLCWKMQQKFAKN 162
           +M HC S     L   I   L R L W+ +QK A N
Sbjct: 508 RMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMN 543


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 366  IINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNH-GPTSQETLL 190
            +I+ + E A+E + +  + E  +  H IS   ++  ++  D     P     PT+ E ++
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264

Query: 189  EDAAKICKEFMARDPNEVRF 130
            + AAKI +      P  ++F
Sbjct: 1265 DAAAKIGEALNITGPYNIQF 1284


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 312  AEDPVNHHFISFVQKDGALYELDGR 238
            AE+ V  HF+    KD  LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 363 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 271
           ++A + L ++ +++T + E+PV+HH  S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -3

Query: 477 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 301
           +NT+++   +  ++ K ++  K +D +  G  L + E    +H +    GQ      +DP
Sbjct: 31  SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84

Query: 300 VNHHFISFVQKDGALYE 250
            N+   SFV K+  LYE
Sbjct: 85  KNYQARSFV-KENELYE 100


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
 Frame = -3

Query: 774 VPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 658
           +PLES PD L K +        K+G    W I V V    PE   W+
Sbjct: 326 IPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,668
Number of Sequences: 5004
Number of extensions: 68148
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)