Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p24
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 151 6e-37
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 150 1e-36
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 140 8e-34
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 71 1e-12
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.53
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.53
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 31 0.71
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 3.8
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 3.8
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 3.8
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 29 5.0
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 29 5.0
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 6.6
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 6.6
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 28 8.7
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 28 8.7
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 28 8.7
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 28 8.7
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 151 bits (366), Expect = 6e-37
Identities = 91/222 (40%), Positives = 125/222 (56%), Gaps = 2/222 (0%)
Frame = -3
Query: 771 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 592
PLESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK
Sbjct: 7 PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56
Query: 591 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 418
+E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EA
Sbjct: 57 VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116
Query: 417 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGR 238
K + R L + + H A +GQT PS + V HHFI FV K+G LYE+D R
Sbjct: 117 KKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSR 173
Query: 237 KAFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 112
+ F GPTS TL++DA C+ + + N V F+ IA+V
Sbjct: 174 RPFAREIGPTSDATLVKDAGAACQHLIEKLDN-VSFSAIAVV 214
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 150 bits (364), Expect = 1e-36
Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 2/221 (0%)
Frame = -3
Query: 768 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 589
LESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 12 LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70
Query: 588 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 415
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 71 YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128
Query: 414 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 235
++ R LL + AH+E A+EG+T D V++HFI++V K+G LYE+D
Sbjct: 129 LVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSCA 185
Query: 234 AFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 112
FP G T+ T+++DA+ KE M N + F+ +ALV
Sbjct: 186 PFPRPLGATTDSTMIKDASTAIKELMNNVKN-LSFSAMALV 225
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 140 bits (340), Expect = 8e-34
Identities = 87/241 (36%), Positives = 132/241 (54%), Gaps = 2/241 (0%)
Frame = -3
Query: 768 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 589
LESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 11 LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69
Query: 588 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 415
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 70 YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127
Query: 414 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 235
+ R LL + AHKE A+EG+T P + V +HFI++V K+G L+E+D
Sbjct: 128 LVGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCS 184
Query: 234 AFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALVASD*LISFLSFEQQKSC*V 55
FP G T+ T++ DA + + + ++ F+ +AL + SF+Q+ C V
Sbjct: 185 PFPRPLGATTDSTMIRDAFSTSIKDLMDNVQKLSFSAMAL-------NLFSFKQRYICLV 237
Query: 54 I 52
I
Sbjct: 238 I 238
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 70.5 bits (165), Expect = 1e-12
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 4/223 (1%)
Frame = -3
Query: 768 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 589
+ES+P V + L+ GV + ++ LD + + RP ++ LF ++
Sbjct: 10 IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59
Query: 588 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 409
+E + ++ NIF+ Q I NAC T AL++ + N D + ++ A L
Sbjct: 60 DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116
Query: 408 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRK 235
D RG L SE I H +++ + + E N+HF+++V +YELDG +
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDGLR 176
Query: 234 AFPVNHGPTSQETLLEDAAK--ICKEFMARDPNEVRFTVIALV 112
P+ +E +A K I + E+ F ++ALV
Sbjct: 177 ELPLEVAEFQKEQDWIEAIKPVIQQRMQKYSEGEITFNLMALV 219
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 456 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 310
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 456 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 310
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 456 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 310
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -3
Query: 483 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 304
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 303 PVNHHFISFVQK 268
+ ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -3
Query: 615 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 448
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 447 --GHMQKFLNEA-KGLDATARGKLLEK 376
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -3
Query: 615 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 448
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 447 --GHMQKFLNEA-KGLDATARGKLLEK 376
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -3
Query: 615 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 448
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 447 --GHMQKFLNEA-KGLDATARGKLLEK 376
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +1
Query: 268 FLDKADKMMVDGIFST--WCICLAF 336
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +1
Query: 268 FLDKADKMMVDGIFST--WCICLAF 336
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 693 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 517
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 516 NACGTIALVHSVANNTDIIELSDGH 442
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 693 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 517
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 516 NACGTIALVHSVANNTDIIELSDGH 442
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 693 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 517
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 516 NACGTIALVHSVANNTDIIELSDGH 442
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 324 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 181
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 257 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 305
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 324 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 181
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 270 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 318
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 324 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 181
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 269 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 317
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 324 NTPSAEDPVNHHFISFVQKDGALYELDGRKA-FPVNHGPTSQETLLEDA 181
N PSA + H FI +K+ L +L R A + + G +S L ED+
Sbjct: 272 NRPSASTLLKHQFIKRAKKNSILVDLIERAAEYRLRTGVSSDSDLDEDS 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,767,807
Number of Sequences: 27780
Number of extensions: 371389
Number of successful extensions: 1090
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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