Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p23
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471...    31   0.91 

>12_02_0699 +
           22245933-22246213,22246493-22246575,22246844-22247125,
           22248725-22248986,22250146-22251781,22251910-22252416
          Length = 1016

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 230 SLLKYCWNFASVRNVFFWTKIFNTAYSQGRLIDIVARCYICFISVSKS 373
           S LK+ ++ A ++ V F  + F   Y Q RL+D+V   Y    S+S+S
Sbjct: 411 SALKFVYSIALLQGVLFCYR-FTLCYEQKRLVDLVVNKYRFVTSLSES 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,102
Number of Sequences: 37544
Number of extensions: 298583
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)