Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p23
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger pro...    30   2.5  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81109-10|CAB03242.2|  290|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF099922-4|AAK21409.1|  497|Caenorhabditis elegans Hypothetical ...    29   4.3  
U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine rece...    29   5.7  
U23454-9|AAC46522.2|  249|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z83237-4|CAB05788.1|  356|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical
           protein F45B8.4 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 860 HTDTXPFMXSHCPRKVYRRSDLTRH 786
           H+DT P+   +C ++ +++SD+ +H
Sbjct: 176 HSDTRPYPCEYCGKRFHQKSDMKKH 200


>U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger
           protein PAG-3 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 860 HTDTXPFMXSHCPRKVYRRSDLTRH 786
           H+DT P+   +C ++ +++SD+ +H
Sbjct: 176 HSDTRPYPCEYCGKRFHQKSDMKKH 200


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 869 YKYHTDTXPFMXSHCPRKVYRRSDLTRHLK 780
           Y+ HT   PF    C RK  R   L  H+K
Sbjct: 304 YRKHTGAKPFACKECSRKFSRSDHLQLHMK 333


>Z81109-10|CAB03242.2|  290|Caenorhabditis elegans Hypothetical
           protein R10D12.4 protein.
          Length = 290

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 146 TYLVLNIILQETSLTRLFLLISAFQGFTSLLKYCWNFASVRNVFFWTKIFNTAYSQGRLI 325
           TY  ++ IL  + +     LI          KY W + + +N+  W ++ +T    G + 
Sbjct: 126 TYFFISSILSFSKVVFDVFLIPCCLVLMDHKKYGWTYYNPKNIKNWGELIDTIMEVG-IF 184

Query: 326 DIVARCY-ICFISVSKSN 376
                CY I FI +  SN
Sbjct: 185 TATLLCYVIIFIKIRISN 202


>AF099922-4|AAK21409.1|  497|Caenorhabditis elegans Hypothetical
           protein F56F11.3 protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 869 YKYHTDTXPFMXSHCPRKVYRRSDLTRHLK 780
           Y+ HT   PF  S C R   R   L+ H+K
Sbjct: 465 YRKHTGDRPFKCSQCSRAFSRSDHLSLHMK 494


>U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein67 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = +2

Query: 158 LNIILQETSLTRLFLLISAFQGFTSLLKY----CWNFASVRNVFF--WTKIFN 298
           +NI L  T +  +F L      +T  L +    CWN+ S  NVF   W    N
Sbjct: 67  INIFLMGTGICDMFCLCLFIHAYTLTLIFPDDRCWNYHSYINVFIEVWVSSLN 119


>U23454-9|AAC46522.2|  249|Caenorhabditis elegans Hypothetical
           protein C10A4.8 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 866 KYHTDTXPFMXSHCPRKVYRRSDLTRH 786
           + HT   PF   HC R   +  +LTRH
Sbjct: 188 RIHTGEKPFKCEHCGRAFRQPGNLTRH 214


>Z83237-4|CAB05788.1|  356|Caenorhabditis elegans Hypothetical
           protein R06B9.4 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 202 VDISLSRVHIPAQI----LLEFCKCQKCLFLDKDL*YSLQS 312
           VD++    H PA+I    + E+C C  CL    ++ Y+LQS
Sbjct: 143 VDLNAVNAHEPAKIHVDNVAEYCHCLPCLPTRGNVIYTLQS 183


>U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical
           protein B0310.2 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 860 HTDTXPFMXSHCPRKVYRRSDLTRHLK 780
           HT   P    HC +K  R+ +L RH K
Sbjct: 330 HTGLRPHTCPHCHKKFNRKDNLLRHKK 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,877
Number of Sequences: 27780
Number of extensions: 338931
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)