Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p21
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    29   1.00 
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.7  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    27   4.0  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   4.0  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   7.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   7.0  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   7.0  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   7.0  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   9.3  

>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 201 VSIAKTLEELQLKKEW-QFSYDA-NVLKENPQSSAIIDNNPKDAEA 70
           + IAKT   LQ    W QF +   N + EN +  +IIDN PKD ++
Sbjct: 119 MDIAKTANSLQ--PGWNQFIFQTCNEIIENEKIHSIIDNIPKDIDS 162


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -3

Query: 264 KSAIQRGRDVGFPLLRFDVNDVSIAKTLEELQLKKEWQFSYDANVLKENPQSSAIIDNNP 85
           KS  Q G    F      VN  S A   EE    K+ QF++D N+++ +    + ++  P
Sbjct: 174 KSESQLGESFSFNQDNTFVNYASPASITEEFVEPKDSQFNHDVNLMQGSAPGYSTVE--P 231

Query: 84  KDAEAS 67
           +D  AS
Sbjct: 232 EDNFAS 237


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 679 ATHPHRFFIFTLYHNPV 729
           A HP++  IF  YHNPV
Sbjct: 130 AEHPYKANIFRSYHNPV 146


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 705 NEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCD 571
           N  P  + +  P D  R +   R   R+  P  + PPG+++   D
Sbjct: 216 NNIPPEINKVSPHDDLRPLSDSRRRARRPHPSDTIPPGASMARSD 260


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 324 VYLIVPKNSLKSADIVQVLAKSAIQRGR 241
           V LI+P+ + + AD++  L  +A+Q+GR
Sbjct: 539 VTLILPETANRDADLIDRLEIAAMQQGR 566


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 768 GVIQIQPKVIXILNRVMVQGENEE 697
           G++  +P V+ ++NR    G+NEE
Sbjct: 58  GIVTRRPLVLQLINRPSASGKNEE 81


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 228 PLLRFDVNDVSIAKTLEELQLKKEWQFSYDANVLKENPQSSAIIDN 91
           P   F+V ++SI+   E  Q  +  Q     N  KENPQ S  + N
Sbjct: 162 PFYLFEVKNLSISFHFESPQQVEPCQ---PVNPFKENPQKSGFVVN 204


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 333 ILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDVSIAKTLEELQLKK 160
           ILQ  L V  N  K AD+  +L      +  D   P ++  V +V + K     ++ K
Sbjct: 3   ILQSILFVTGNKHKLADVKNILGDRFEIKNHDYDLPEIQGSVKEVVLEKCKAAAEIVK 60


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 696 PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAP 598
           PV V RA    + R+I  + EH    WP   +P
Sbjct: 565 PVMVHRAILGSLERMIAILTEHYAGKWPFWMSP 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,381
Number of Sequences: 5004
Number of extensions: 61613
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)