Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p21
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0337 - 22454281-22456399,22458520-22459388 30 2.4
07_03_0820 - 21749477-21749866,21751192-21751590 30 2.4
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 29 4.2
11_06_0347 + 22555087-22555943,22556638-22558783 29 4.2
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 29 4.2
11_03_0128 - 10437407-10438049,10438097-10438272 29 5.5
07_01_0089 - 687064-687543 28 7.3
01_02_0058 - 10699702-10700517,10700997-10701206 28 7.3
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 7.3
07_01_0407 + 3122383-3122445,3135572-3136393 28 9.7
07_01_0403 + 3077544-3077606,3090738-3091559 28 9.7
07_01_0399 + 3043624-3043818,3045494-3046315 28 9.7
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718 28 9.7
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 28 9.7
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 28 9.7
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 365 GALKQCAVRYIILLDLVQLTQRAHFSSIVASHGQTDIPKARPR 493
G +K C + ++L +V + +F +++ SH QT P + R
Sbjct: 508 GKVKSCQIHDMVLEYIVSKSGEENFITVIGSHWQTPFPSYKVR 550
>07_03_0820 - 21749477-21749866,21751192-21751590
Length = 262
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +3
Query: 519 LAFRLTLNGLEPTP*PRNRTKPDLILEELIP 611
L FR+ L GL P P RNR K D EEL P
Sbjct: 219 LPFRVLLKGLLPHPLLRNRVKQD--FEELFP 247
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 331 ITGVSHRSQEQSEECRHCSSTGQERDTKRPRRRLSST 221
I G H S ++ EECR +S GQ + R+R S T
Sbjct: 486 IIGARHNSPQRKEECR-TNSPGQPKGHDEKRKRRSYT 521
>11_06_0347 + 22555087-22555943,22556638-22558783
Length = 1000
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 365 GALKQCAVRYIILLDLVQLTQRAHFSSIVASHGQTDIPKARPR 493
G +K C + ++L +V + +F +++ SH QT P + R
Sbjct: 504 GKVKSCQIHDMVLEYIVSKSGDENFITVIGSHWQTPFPSYKVR 546
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 578 KTRFDPGGADTSGQVCRTCSRTNRITR 658
K +D G DTSG VCR+ S N I +
Sbjct: 8 KKGWDSNGMDTSGSVCRSSSDINYINQ 34
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 521 CFSANIEWP*ANALAKKSHKTRFDPGGADTSGQVCRTCSR 640
C +A I P A++ H R A TS CRTC R
Sbjct: 109 CPAAGIHRPDDGHRARQRHLPRRSRSTASTSSTTCRTCCR 148
>07_01_0089 - 687064-687543
Length = 159
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/111 (22%), Positives = 39/111 (35%)
Frame = -3
Query: 696 PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCDFLARALAQGHSMLAEKQE 517
P +RR + RV+ FV VR ++ G + L G++ + E
Sbjct: 40 PAALRRFLADE--RVV-FVGYGVRSDCRKLEEQHGLEVARTVELRSLAGMGNTSMQRMAE 96
Query: 516 IRRGWSQIRGLALGISVCPWDATMLEKWARCVSCTKSRRMIYLTAHCLRAP 364
GW + + WDA L K +C + L H + AP
Sbjct: 97 EHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYACVDAYLSFRLAVHVVAAP 147
>01_02_0058 - 10699702-10700517,10700997-10701206
Length = 341
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 759 QIQPKVIXILNRVMVQGENEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSA 601
QI P +LN +G +P V AR D+ V RF+ V + P VSA
Sbjct: 214 QITPSYRNLLNYKCSRGGGADPAVVNNARDEDLATVARFMPAFVGKLRP-VSA 265
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -3
Query: 462 PWDATMLE----KWARCVSCTKSRRMIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSL 295
PW++T+ K + C K+ ++ PA+ EKY IL ++ N
Sbjct: 436 PWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKILHAADVIDLNMA 495
Query: 294 KSADIVQVLAKSAIQ 250
+ V++L + Q
Sbjct: 496 NAFKNVKILCQCPCQ 510
>07_01_0407 + 3122383-3122445,3135572-3136393
Length = 294
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 759 QIQPKVIXILNRVMVQGENEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSA 601
QI P +LN +G +P V AR D+ V RF+ V + P VSA
Sbjct: 165 QITPSYRNLLNYRCSRGGGADPAVVNNARDEDLATVARFMPAFVGKLRP-VSA 216
>07_01_0403 + 3077544-3077606,3090738-3091559
Length = 294
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 759 QIQPKVIXILNRVMVQGENEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSA 601
QI P +LN +G +P V AR D+ V RF+ V + P VSA
Sbjct: 165 QITPSYRNLLNYRCSRGGGADPAVVNNARDEDLATVARFMPAFVGKLRP-VSA 216
>07_01_0399 + 3043624-3043818,3045494-3046315
Length = 338
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 759 QIQPKVIXILNRVMVQGENEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSA 601
QI P +LN +G +P V AR D+ V RF+ V + P VSA
Sbjct: 209 QITPSYRNLLNYRCSRGGGADPAVVNNARDEDLATVARFMPAFVGKLRP-VSA 260
>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
Length = 756
Score = 27.9 bits (59), Expect = 9.7
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +2
Query: 461 GQTDIPKARP--RICDQPLLISCFSANIEWP*ANALAKKSHKTRFDPGGADTSGQVCRTC 634
G T P AR R D LLI + +WP A SH T GG SG C
Sbjct: 224 GMTPDPSARHAHRQGDLDLLIKRLDDHEKWPQGTVKALDSHVTCEVYGGTGHSGNDCPE- 282
Query: 635 SRTNRITRGTSDG 673
+R + G ++G
Sbjct: 283 TREEAMYMGNNNG 295
>03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -2
Query: 337 EHITGVSHRSQEQSEECRHCSSTGQERDTKRPRRRLSSTA 218
++++ +S SQ ++ + C ++ ++R ++PR LSS A
Sbjct: 1229 DYLSSMSQISQLENMQLSECKASSKQRRCRQPRHYLSSGA 1268
>01_06_1416 -
37174913-37175006,37175299-37175441,37175932-37176027,
37177125-37177364,37177456-37177812,37178020-37178097,
37178387-37178434,37179406-37179675,37179954-37180054,
37180452-37180605
Length = 526
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 553 GSRPFNVSRKARNQEGLVTNPRSRFGYISLSVGRDDAGEV--GSLRELHQIEEDDISDGA 380
G RP ++ + Q +T + G SL + A E L++LHQ D ++ G
Sbjct: 328 GFRPSDLLKILIQQLDPLTE-QQMLGIYSLQQSSEQAEEALAQGLQQLHQSLADTVAAGT 386
Query: 379 LLEGPGL 359
L +GPG+
Sbjct: 387 LNDGPGV 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,526,961
Number of Sequences: 37544
Number of extensions: 436543
Number of successful extensions: 1203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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