Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p21
(785 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT022343-1|AAY54759.1| 216|Drosophila melanogaster IP08324p pro... 32 1.0
BT022303-1|AAY54719.1| 222|Drosophila melanogaster IP08224p pro... 32 1.0
BT022243-1|AAY54659.1| 216|Drosophila melanogaster IP08124p pro... 32 1.0
AE014298-803|AAF46089.2| 216|Drosophila melanogaster CG15766-PA... 32 1.0
AY047554-1|AAK77286.1| 1478|Drosophila melanogaster GH06265p pro... 29 5.4
AE014298-2525|AAO41688.1| 223|Drosophila melanogaster CG33935-P... 29 5.4
AE013599-1820|AAF58298.2| 1843|Drosophila melanogaster CG30483-P... 29 5.4
AE014134-668|AAF51067.1| 1131|Drosophila melanogaster CG10019-PA... 29 7.2
AY061041-1|AAL28589.1| 430|Drosophila melanogaster HL08023p pro... 29 9.5
AE014298-1646|AAF48065.2| 430|Drosophila melanogaster CG1561-PA... 29 9.5
AE014298-1645|AAS65318.1| 635|Drosophila melanogaster CG1561-PB... 29 9.5
>BT022343-1|AAY54759.1| 216|Drosophila melanogaster IP08324p
protein.
Length = 216
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = -3
Query: 399 MIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLL 220
+++L + A + ++ V + L V+ + L+ ++ L ++ QRGRD+G L+
Sbjct: 103 ILHLLSAVETATDVCRRFSVPSCLHVHALGVDPQLRGRNLGGRLMETVAQRGRDLGHQLV 162
Query: 219 RFDVNDVSIAKTLEEL 172
D V A+ ++ L
Sbjct: 163 SVDCTSVYSARLVQRL 178
>BT022303-1|AAY54719.1| 222|Drosophila melanogaster IP08224p
protein.
Length = 222
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = -3
Query: 399 MIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLL 220
+++L + A + ++ V + L V+ + L+ ++ L ++ QRGRD+G L+
Sbjct: 103 ILHLLSAVETATDVCRRFSVPSCLHVHALGVDPQLRGRNLGGRLMETVAQRGRDLGHQLV 162
Query: 219 RFDVNDVSIAKTLEEL 172
D V A+ ++ L
Sbjct: 163 SVDCTSVYSARLVQRL 178
>BT022243-1|AAY54659.1| 216|Drosophila melanogaster IP08124p
protein.
Length = 216
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = -3
Query: 399 MIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLL 220
+++L + A + ++ V + L V+ + L+ ++ L ++ QRGRD+G L+
Sbjct: 103 ILHLLSAVETATDVCRRFSVPSCLHVHALGVDPQLRGRNLGGRLMETVAQRGRDLGHQLV 162
Query: 219 RFDVNDVSIAKTLEEL 172
D V A+ ++ L
Sbjct: 163 SVDCTSVYSARLVQRL 178
>AE014298-803|AAF46089.2| 216|Drosophila melanogaster CG15766-PA
protein.
Length = 216
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = -3
Query: 399 MIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLL 220
+++L + A + ++ V + L V+ + L+ ++ L ++ QRGRD+G L+
Sbjct: 103 ILHLLSAVETATDVCRRFSVPSCLHVHALGVDPQLRGRNLGGRLMETVAQRGRDLGHQLV 162
Query: 219 RFDVNDVSIAKTLEEL 172
D V A+ ++ L
Sbjct: 163 SVDCTSVYSARLVQRL 178
>AY047554-1|AAK77286.1| 1478|Drosophila melanogaster GH06265p
protein.
Length = 1478
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 370 PQAMRRQIYHPPRFGAAHAASPLLQHRRVPRTN*YTQSETSDL*PAPP 513
P ++Q PP A+H A+P +Q ++V + Q PAPP
Sbjct: 831 PAQQQQQAQQPPTALASHYAAPQVQVQQVQQVQQSPQQSAPQSPPAPP 878
>AE014298-2525|AAO41688.1| 223|Drosophila melanogaster CG33935-PA,
isoform A protein.
Length = 223
Score = 29.5 bits (63), Expect = 5.4
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = -3
Query: 522 QEIRRGWSQIRGLALGISVCPWDATMLEKWARCVS-CTKSR-RMIYLTAHCLRAPALYEK 349
Q R G SQIRG+ + P + +L+ C S C ++ + + C R + Y+K
Sbjct: 93 QLTRLGLSQIRGILAAFT--PQETLVLQSIWYCGSGCMRNAIQTTPFCSSCSRPMSEYQK 150
Query: 348 YKVQNILQVYLIVPKNSLKSADIVQVLAKSAIQRGR 241
+V ++ ++P +++++ + L + + R R
Sbjct: 151 LRVTETYRILAVLPISAVQTPRVTNCLHRPKLVRLR 186
>AE013599-1820|AAF58298.2| 1843|Drosophila melanogaster CG30483-PA
protein.
Length = 1843
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 370 PQAMRRQIYHPPRFGAAHAASPLLQHRRVPRTN*YTQSETSDL*PAPP 513
P ++Q PP A+H A+P +Q ++V + Q PAPP
Sbjct: 1196 PAQQQQQAQQPPTALASHYAAPQVQVQQVQQVQQSPQQSAPQSPPAPP 1243
>AE014134-668|AAF51067.1| 1131|Drosophila melanogaster CG10019-PA
protein.
Length = 1131
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 575 HKTRFDPGGADTSGQVCRTCSRTNR--ITRGT 664
HK+ +PG AD +C TCS NR +T GT
Sbjct: 988 HKSNKNPGSADRQPLIC-TCSSPNRNPVTYGT 1018
>AY061041-1|AAL28589.1| 430|Drosophila melanogaster HL08023p
protein.
Length = 430
Score = 28.7 bits (61), Expect = 9.5
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -3
Query: 702 EEPVRVRR--ARPS-DVP--RVIRFVREHVRQTWPEVSAPP 595
E PV + A+P D+P +V +F+R+ V Q WPE+ A P
Sbjct: 2 ESPVEQQEDTAKPDEDLPNEQVTQFLRQLVSQLWPELGANP 42
>AE014298-1646|AAF48065.2| 430|Drosophila melanogaster CG1561-PA,
isoform A protein.
Length = 430
Score = 28.7 bits (61), Expect = 9.5
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -3
Query: 702 EEPVRVRR--ARPS-DVP--RVIRFVREHVRQTWPEVSAPP 595
E PV + A+P D+P +V +F+R+ V Q WPE+ A P
Sbjct: 2 ESPVEQQEDTAKPDEDLPNEQVTQFLRQLVSQLWPELGANP 42
>AE014298-1645|AAS65318.1| 635|Drosophila melanogaster CG1561-PB,
isoform B protein.
Length = 635
Score = 28.7 bits (61), Expect = 9.5
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -3
Query: 702 EEPVRVRR--ARPS-DVP--RVIRFVREHVRQTWPEVSAPP 595
E PV + A+P D+P +V +F+R+ V Q WPE+ A P
Sbjct: 207 ESPVEQQEDTAKPDEDLPNEQVTQFLRQLVSQLWPELGANP 247
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,893,597
Number of Sequences: 53049
Number of extensions: 718882
Number of successful extensions: 2002
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -