Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p20
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.0  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 742 DDRIFIRMVYNPGDFLGVTFENGHNXFSILIK 837
           DD   + ++Y PGD LGV   N       ++K
Sbjct: 742 DDIASMEILYKPGDHLGVFACNRSELVEAILK 773


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -3

Query: 483 GTENSQVKIWDLKEQSNVANFPGHVGPVTSISFSENGYYLATAAED 346
           G   +Q+KIW   +++ +    G   P+     ++  Y  +T   D
Sbjct: 58  GLTEAQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHSTVPVD 103


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -3

Query: 483 GTENSQVKIWDLKEQSNVANFPGHVGPVTSISFSENGYY 367
           G   +Q+KIW   +++ +    G   P+ ++     G Y
Sbjct: 58  GLNEAQIKIWFQNKRAKIKKASGQKNPL-ALQLMAQGLY 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,330
Number of Sequences: 438
Number of extensions: 5885
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)