Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p19
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-2|AAB70943.1|  585|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z92822-9|CAL49448.1|  576|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z82094-5|CAL49446.1|  576|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    28   4.1  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      28   4.1  
AF078790-1|AAC26934.1|  398|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF038605-1|AAK68680.1|  398|Caenorhabditis elegans Hypothetical ...    27   5.5  

>AF025452-2|AAB70943.1|  585|Caenorhabditis elegans Hypothetical
           protein B0454.6 protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 170 NSILHLLSPFGPIFAT--FRTKTSFRGCKTV*AFVALGTLVGTSS 298
           +S L L+ P+  +  T  F    S RGC TV   +++G L+G ++
Sbjct: 285 SSTLTLMVPYDQVHTTAPFAEAFSARGCTTVMYIISIGALIGLTN 329


>Z92822-9|CAL49448.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK520.3b protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 390 DKIGKKDAKSTQVNGNLKSALKKNLPCPWACELVP 286
           +K  KK     +  GN K  +++N PCP   +L+P
Sbjct: 462 EKYKKKIEDIVRKGGNQKDLVEENTPCPICDDLMP 496


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical protein
            ZK520.3a protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 390  DKIGKKDAKSTQVNGNLKSALKKNLPCPWACELVP 286
            +K  KK     +  GN K  +++N PCP   +L+P
Sbjct: 1269 EKYKKKIEDIVRKGGNQKDLVEENTPCPICDDLMP 1303


>Z82094-5|CAL49446.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK520.3b protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 390 DKIGKKDAKSTQVNGNLKSALKKNLPCPWACELVP 286
           +K  KK     +  GN K  +++N PCP   +L+P
Sbjct: 462 EKYKKKIEDIVRKGGNQKDLVEENTPCPICDDLMP 496


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical protein
            ZK520.3a protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 390  DKIGKKDAKSTQVNGNLKSALKKNLPCPWACELVP 286
            +K  KK     +  GN K  +++N PCP   +L+P
Sbjct: 1269 EKYKKKIEDIVRKGGNQKDLVEENTPCPICDDLMP 1303


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 390  DKIGKKDAKSTQVNGNLKSALKKNLPCPWACELVP 286
            +K  KK     +  GN K  +++N PCP   +L+P
Sbjct: 1269 EKYKKKIEDIVRKGGNQKDLVEENTPCPICDDLMP 1303


>AF078790-1|AAC26934.1|  398|Caenorhabditis elegans Hypothetical
           protein F36H12.10 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 390 DKIGKKDAK--STQVNGNLKSALKKNLPCPWACELVPTNVPNATKAQTVLHPRKDVFVLK 217
           DK  K D K  +T   G+ +   +K      A +  PTN  N T A    HP  + +VL+
Sbjct: 34  DKGKKADTKKKNTATEGSKRVKKEKKKDDGEAAKGDPTNKTNMTPAPPQTHPIVEQWVLR 93

Query: 216 VAKIG 202
              +G
Sbjct: 94  ALDVG 98


>AF038605-1|AAK68680.1|  398|Caenorhabditis elegans Hypothetical
           protein C02B10.6 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 390 DKIGKKDAK--STQVNGNLKSALKKNLPCPWACELVPTNVPNATKAQTVLHPRKDVFVLK 217
           DK  K D K  +T   G+ +   +K      A +  PTN  N T A    HP  + +VL+
Sbjct: 34  DKGKKADTKKKNTATEGSKRVKKEKKKDDGEAAKGDPTNKTNMTPAPPQTHPIVEQWVLR 93

Query: 216 VAKIG 202
              +G
Sbjct: 94  ALDVG 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,431
Number of Sequences: 27780
Number of extensions: 203603
Number of successful extensions: 488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)