Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p19
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.57 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   9.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   9.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   9.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 315 PCPWACEL 292
           PCPW CEL
Sbjct: 234 PCPWICEL 241


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 189 RRCKMELELVTPKGPEKQALTRL 121
           R C  +L+++ P GPE    T L
Sbjct: 65  RNCLEKLKVLVPLGPETSRHTTL 87


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 111 P*YRDESAPASQGPWV 158
           P Y     P S GPW+
Sbjct: 120 PVYYGNFPPRSMGPWI 135


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 111 P*YRDESAPASQGPWV 158
           P Y     P S GPW+
Sbjct: 120 PVYYGNFPPRSMGPWI 135


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 111 P*YRDESAPASQGPWV 158
           P Y     P S GPW+
Sbjct: 120 PVYYGNFPPRSMGPWI 135


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 111 P*YRDESAPASQGPWV 158
           P Y     P S GPW+
Sbjct: 353 PVYYGNFPPRSMGPWI 368


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 346 AVNLSTFGILLTNFVEHILKLRND 417
           A++ S  GIL+T FV  +    ND
Sbjct: 660 AMSFSATGILITLFVCGVFLKHND 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,252
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)