Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p16
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   0.77 
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   1.0  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    25   3.1  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    22   3.1  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   4.1  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    24   5.4  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    24   5.4  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 6   FYYFIIRDSFQAIHFIRITSKPHIPLVQRTTPSISKRASIMIA*KIIMTPPQS 164
           F + + RD +    F+    KPH  LV+ + PS+   AS+  +   +   PQS
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSV---ASLTCSVNSMSVSPQS 129


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 209 VVFHTTFFS--RRINNSTTNDTYIINY 283
           V+FH  F S  R +NN+ T D Y + Y
Sbjct: 30  VLFHEAFLSEQRTVNNTVTFDRYTMQY 56


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 279 LIIYVSFVVELFILLEKNV 223
           L++Y S V+E FIL+EK +
Sbjct: 143 LLVYASNVMEAFILVEKTL 161


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 5/15 (33%)
 Frame = -1

Query: 176 LPGW-----GLWWCH 147
           LP W     G WWCH
Sbjct: 215 LPDWIPFHPGKWWCH 229



 Score = 21.0 bits (42), Expect(2) = 3.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 185 SIGLPGWGLWW 153
           +IG P WG +W
Sbjct: 183 AIGCPHWGKFW 193


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 212 VFHTTFFSRRINNSTTNDTYIINYFIQIKGAVMSDQY 322
           V H TFF R +   TT    +   F+Q    + S+QY
Sbjct: 499 VCHVTFFDRYVKEITTPQNELPTIFLQ---EIASNQY 532


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 218 HTTFFSRRINNSTTNDTYIINYFIQ 292
           H T F     +S++N++Y++NY  Q
Sbjct: 647 HNTLFCIYACHSSSNESYLMNYIEQ 671


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 116 SVYNDCLENNYDTTT 160
           S+Y+  L NNYD+TT
Sbjct: 311 SLYSQRLSNNYDSTT 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,354
Number of Sequences: 5004
Number of extensions: 22609
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)