Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p16
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    27   2.9  
05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938           27   3.8  
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78...    27   5.0  
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202...    26   6.6  
09_02_0525 - 10217332-10217498,10217537-10217750                       26   8.7  
03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640...    26   8.7  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    26   8.7  

>05_01_0578 +
           5180538-5181385,5182480-5182595,5183397-5183605,
           5184024-5184143,5184247-5184375,5184466-5184591,
           5185550-5185667,5186471-5186680,5186788-5187100,
           5187467-5187560,5187760-5187868,5188322-5188593,
           5188684-5188811,5188977-5189211,5189794-5189982,
           5190069-5190349,5190431-5190698,5190719-5190961,
           5191598-5191680,5192484-5192493
          Length = 1366

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 146 NYFLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPDNE 15
           N F+ NH + SL  RWSR   Q  + L        GL   P +E
Sbjct: 372 NVFIKNHAKVSLPLRWSRIQAQGQISLLSRATLTFGLTHYPYSE 415


>05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938
          Length = 252

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 146 NYFLGNHYRRSLTDRWSRAL-YQRDMRLTGNPYEV 45
           +Y LG HYRR        A+ Y   ++L GN  E+
Sbjct: 97  HYMLGEHYRRDFAVVVDEAVAYAETLKLAGNGKEI 131


>10_01_0055 -
           785172-785997,786859-787394,787478-787695,787789-787891,
           788723-788770
          Length = 576

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 215 ILPTVAIITASIGLPGW 165
           +L  VA+IT S G PGW
Sbjct: 519 VLGAVAVITTSSGAPGW 535


>08_01_0245 +
           2023442-2023786,2024485-2024841,2024951-2025393,
           2025475-2025569,2026302-2026477
          Length = 471

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  LHYPG*LPSHSLHKDYQ*ASYPSGTTHDSI 103
           L YPG  P HS  KD   A Y S T  +++
Sbjct: 383 LDYPGVGPEHSFLKDIGRAEYDSVTDQEAL 412


>09_02_0525 - 10217332-10217498,10217537-10217750
          Length = 126

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 122 RRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPDNEV 12
           RR L ++W  ++   D  +T +   V G+EA+ ++ +
Sbjct: 55  RRKLREKWLSSMAGADTVVTSDGGGVEGMEAVEESSI 91


>03_06_0177 +
           32163393-32163443,32163711-32163803,32163875-32164071,
           32164157-32164262,32164391-32164537,32164637-32164756
          Length = 237

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 239 FWKKMWYEILPTVAIITASIGLPGWGLWWCHNYFL 135
           FWK + +   PT+       GL G+ ++ C +Y+L
Sbjct: 150 FWKLVAFFATPTITPALFGGGLLGYVMYDCTHYYL 184


>01_01_0623 +
           4672581-4673413,4674274-4674389,4674694-4674902,
           4675953-4676072,4676185-4676313,4676394-4676442,
           4676899-4676970,4677574-4677707,4677798-4677915,
           4678332-4678541,4678630-4678942,4679539-4679632,
           4679854-4679962,4680243-4680514,4680597-4680724,
           4680832-4681066,4681570-4681758,4681845-4682128,
           4682218-4682398,4682486-4682728,4682904-4682986,
           4683119-4683227,4687996-4688091,4688675-4688764,
           4688881-4689129,4689233-4689412,4690179-4690250,
           4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 191 TASIGLPGWGLWWCHNYFLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPDNE 15
           T  +  P   LW   N F+ NH + ++   WSR   Q  + L        GL   P +E
Sbjct: 354 TLLLEFPNQPLWT--NVFVKNHAKVAVPLLWSRVQVQGQLSLLSGAILTFGLTRYPYSE 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,966,052
Number of Sequences: 37544
Number of extensions: 129815
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)