Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p16
         (335 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81900-1|CAA57489.1|   70|Homo sapiens NADH oxidoreductase subun...    39   0.004
U54993-1|AAD00084.1|   70|Homo sapiens mitochondrial complex I h...    39   0.004
CR456889-1|CAG33170.1|   70|Homo sapiens ZNF183 protein.               39   0.004
BC000266-1|AAH00266.1|   70|Homo sapiens NADH dehydrogenase (ubi...    39   0.004
BC115376-1|AAI15377.1|  954|Homo sapiens C2orf16 protein protein.      29   4.7  
AL834384-1|CAD39047.1|  845|Homo sapiens hypothetical protein pr...    29   4.7  
AC074091-7|AAX93198.1|  939|Homo sapiens unknown protein.              29   4.7  
AK131539-1|BAD18675.1| 1086|Homo sapiens protein ( Homo sapiens ...    28   8.2  

>X81900-1|CAA57489.1|   70|Homo sapiens NADH oxidoreductase subunit
           MWFE protein.
          Length = 70

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 227 MWYEILPTVAIITASIGLPGWGLWWCHNYFLGNHYRRSLTDRWSRALYQRDMRLTG--NP 54
           MW+EILP ++++   + +PG    + H +  G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 53  YEVNGLEAI 27
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>U54993-1|AAD00084.1|   70|Homo sapiens mitochondrial complex I
           hMWFE subunit protein.
          Length = 70

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 227 MWYEILPTVAIITASIGLPGWGLWWCHNYFLGNHYRRSLTDRWSRALYQRDMRLTG--NP 54
           MW+EILP ++++   + +PG    + H +  G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 53  YEVNGLEAI 27
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>CR456889-1|CAG33170.1|   70|Homo sapiens ZNF183 protein.
          Length = 70

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 227 MWYEILPTVAIITASIGLPGWGLWWCHNYFLGNHYRRSLTDRWSRALYQRDMRLTG--NP 54
           MW+EILP ++++   + +PG    + H +  G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 53  YEVNGLEAI 27
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>BC000266-1|AAH00266.1|   70|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa protein.
          Length = 70

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 227 MWYEILPTVAIITASIGLPGWGLWWCHNYFLGNHYRRSLTDRWSRALYQRDMRLTG--NP 54
           MW+EILP ++++   + +PG    + H +  G   +R     +  +L +RD R++G    
Sbjct: 1   MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60

Query: 53  YEVNGLEAI 27
           Y   GLE I
Sbjct: 61  YVSKGLENI 69


>BC115376-1|AAI15377.1|  954|Homo sapiens C2orf16 protein protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 20  YPG*LPSHSLHKDYQ*ASYPSGTTH 94
           +PG  PSHSL +D++  +   GTTH
Sbjct: 915 FPGERPSHSLSRDFKNQTTLLGTTH 939


>AL834384-1|CAD39047.1|  845|Homo sapiens hypothetical protein
           protein.
          Length = 845

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 20  YPG*LPSHSLHKDYQ*ASYPSGTTH 94
           +PG  PSHSL +D++  +   GTTH
Sbjct: 806 FPGERPSHSLSRDFKNQTTLLGTTH 830


>AC074091-7|AAX93198.1|  939|Homo sapiens unknown protein.
          Length = 939

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 20  YPG*LPSHSLHKDYQ*ASYPSGTTH 94
           +PG  PSHSL +D++  +   GTTH
Sbjct: 900 FPGERPSHSLSRDFKNQTTLLGTTH 924


>AK131539-1|BAD18675.1| 1086|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16772 fis, clone BRAWH3043827, highly  similar
           to Homo sapiens activated p21cdc42Hs kinase (ACK1). ).
          Length = 1086

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 24  RDSFQAIHFIRITSKPHIPLVQRTTPSISKRASIMIA*KII-MTPPQSPTR 173
           R S   +  I    +P +P ++   PS+++ A  M A  ++  TPPQSPTR
Sbjct: 640 RGSGAEVTLIDFGEEPVVPALRPCAPSLAQLA--MDACSLLDETPPQSPTR 688


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,554,652
Number of Sequences: 237096
Number of extensions: 818747
Number of successful extensions: 1335
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)