Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p15
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    30   0.28 
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    28   1.5  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   2.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.1  

>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = +2

Query: 254 RFARLILGTLQYMYVYFNSYFNI*LSL*FIYVLINIFLNCHCQMSLRDWSRVVIKDRCTY 433
           +FAR + G L+ M +   S  N  +++ F+Y+ I + +    + + RDW  ++I   CT+
Sbjct: 156 KFARRVPGHLRNMLLA-ESGCNDGMAIPFLYLAIYLIIEKPARHAGRDWVCIIILYECTF 214

Query: 434 N*VV 445
             V+
Sbjct: 215 GCVL 218


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -2

Query: 690 HDKRVIVARRFHDEHRTIHLRARVRLYDLEP*HSFTEHS*SSLIATEISSGSKMNSVLR 514
           H + +I+   + D H+++ L  RVR  DL     +T H+ +S  + E+  G+  +  +R
Sbjct: 567 HKRGLIMDTTWRDAHQSL-LATRVRTIDLVNIAPYTSHALASAYSLEMWGGATFDVSMR 624


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 272 LGTLQYMYVYFNSYFNI*LSL*FIYVLINIFLNCHCQMSLRDWSRVVIKD 421
           LG L  +Y+YF S+F++  +   ++ +  +F   + Q S R W +   K+
Sbjct: 407 LGALGSLYLYFVSHFSL-YNAFSVFSVCGVFGLYYLQSSYRSWKKEYWKE 455


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 115 IMEVSINMLPYVSSGKVTNSVHHHLSSMDVI 207
           +M  + N+LPY S GKV+ +V  H +  +++
Sbjct: 77  VMTGNWNILPYPSFGKVSPNVTWHTTLRNIV 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,345
Number of Sequences: 5004
Number of extensions: 57299
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)