Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p14
(347 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q752U7 Cluster: AFR476Wp; n=1; Eremothecium gossypii|Re... 36 0.25
UniRef50_UPI0000DB7C35 Cluster: PREDICTED: similar to partner of... 32 2.4
UniRef50_Q4UF43 Cluster: TatD-like deoxyribonuclease, putative; ... 31 4.1
UniRef50_A1C6S4 Cluster: Putative uncharacterized protein; n=1; ... 31 4.1
UniRef50_A6E6U0 Cluster: Signal Transduction Histidine Kinase; n... 31 5.5
UniRef50_Q22CV8 Cluster: Putative uncharacterized protein; n=1; ... 31 5.5
UniRef50_A0BZ69 Cluster: Chromosome undetermined scaffold_138, w... 31 5.5
UniRef50_Q9P6L8 Cluster: Suppressor of RNA polymerase B srb8; n=... 31 5.5
UniRef50_Q9CWU0 Cluster: ES cells cDNA, RIKEN full-length enrich... 31 7.2
UniRef50_Q5FU13 Cluster: Acriflavin resistance protein F; n=1; G... 31 7.2
UniRef50_Q13PL4 Cluster: Cation/multidrug efflux pump, AcrB/AcrD... 31 7.2
UniRef50_A5N796 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_A6RIQ4 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_A4AMS3 Cluster: Putative uncharacterized protein; n=1; ... 30 9.5
UniRef50_Q9LJQ1 Cluster: Gb|AAD55299.1; n=5; Magnoliophyta|Rep: ... 30 9.5
UniRef50_Q8LPQ5 Cluster: AT3g18290/MIE15_8; n=3; core eudicotyle... 30 9.5
UniRef50_A7E5H6 Cluster: Putative uncharacterized protein; n=1; ... 30 9.5
UniRef50_Q56229 Cluster: NADH-quinone oxidoreductase subunit 14;... 30 9.5
UniRef50_Q7VQI3 Cluster: UDP-3-O-[3-hydroxymyristoyl] N-acetylgl... 30 9.5
>UniRef50_Q752U7 Cluster: AFR476Wp; n=1; Eremothecium gossypii|Rep:
AFR476Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 165
Score = 35.5 bits (78), Expect = 0.25
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 202 GCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEY 104
G F DT + CGK + + +CD+ ++SC++
Sbjct: 45 GSFEDTAVACGKVLRVCEAAVSMCDMLQWSCKH 77
>UniRef50_UPI0000DB7C35 Cluster: PREDICTED: similar to partner of
drosha CG1800-PA; n=2; Endopterygota|Rep: PREDICTED:
similar to partner of drosha CG1800-PA - Apis mellifera
Length = 627
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 39 GPNSLGFGQIPSSSLTCL--KTMLYSQEYSYKSQRSKNVRASLTDLPQTMI 185
GP S+ ++P S++ CL K L+ +E K Q+ ++ A + LP I
Sbjct: 204 GPGSVRKHEVPVSAIPCLQYKRALHEEEEERKKQKERDPNAEVCSLPSAKI 254
>UniRef50_Q4UF43 Cluster: TatD-like deoxyribonuclease, putative;
n=3; Piroplasmida|Rep: TatD-like deoxyribonuclease,
putative - Theileria annulata
Length = 377
Score = 31.5 bits (68), Expect = 4.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 253 GDKAHLTELKKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEY 104
G H +L + E + + II+ + E LDLC+ Y+ C+Y
Sbjct: 66 GSLKHNPDLISVLERSKSVGMEKIIITAGCLEEVHEALDLCNTYDKECKY 115
>UniRef50_A1C6S4 Cluster: Putative uncharacterized protein; n=1;
Aspergillus clavatus|Rep: Putative uncharacterized
protein - Aspergillus clavatus
Length = 261
Score = 31.5 bits (68), Expect = 4.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 92 ENHAVFAGVFVQIAEVQKCTGFVNRFTTDY--DRVVKTTV 205
EN+ G + ++A++ ++NRFT DY DR TT+
Sbjct: 124 ENYVNAQGKYGRLADLDNTAAYLNRFTIDYVADRAAATTI 163
>UniRef50_A6E6U0 Cluster: Signal Transduction Histidine Kinase; n=1;
Pedobacter sp. BAL39|Rep: Signal Transduction Histidine
Kinase - Pedobacter sp. BAL39
Length = 818
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 110 AGVFVQIAEVQKCTGFVNRFTTDYDRVVKTTVRMLAYFFKFCQVSFISNYM-TIDIYE*K 286
A FVQ E +K ++++ + ++ TT AY FKF S NY+ I ++
Sbjct: 454 AAFFVQQKEYKKADYYLSKVLSAPREMISTTALASAYQFKFKTDSAAGNYLEAIKHFQAA 513
Query: 287 KQKMSFAYQHLTTNLSEQ 340
K + HL +E+
Sbjct: 514 KGITDSVFNHLRLKQTEE 531
>UniRef50_Q22CV8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 603
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 167 FTTDY---DRVVKTTVRMLAYFFKFCQVSFISNYMTIDIY 277
FTT+Y +++++ Y FK C VSF N+ TID+Y
Sbjct: 489 FTTNYCSTEQLLQGKEADSLYLFKECIVSFNLNFQTIDVY 528
>UniRef50_A0BZ69 Cluster: Chromosome undetermined scaffold_138,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_138,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 577
Score = 31.1 bits (67), Expect = 5.5
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -2
Query: 307 RERHFLFLLLIYVDCHIVGDKAHLTELKKICEH--AYGCFHDTIIVCGKSVNEARTFLDL 134
+E+++L L I CH+ +K +L +LK C+H Y C KSV + L
Sbjct: 162 QEKYYLILTQIEKKCHLCKNKINLIDLK--CQHQMCYNCIQKQ-FEQSKSVQYIKCNLLG 218
Query: 133 CDLYEYSCEY 104
C Y Y Y
Sbjct: 219 CTEYIYKSFY 228
>UniRef50_Q9P6L8 Cluster: Suppressor of RNA polymerase B srb8; n=1;
Schizosaccharomyces pombe|Rep: Suppressor of RNA
polymerase B srb8 - Schizosaccharomyces pombe (Fission
yeast)
Length = 1233
Score = 31.1 bits (67), Expect = 5.5
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 71 VIFFDVPENHAVFAGVFVQIAEVQKCTGFVNRF-TTDYDRVVKTTVRMLAYFFKFCQVSF 247
++ F VP A++ F++ A V + F+ + TTD VK + A F +SF
Sbjct: 168 LVKFRVPFTRAIW---FIRCAGVNEARSFLRKVQTTDITEWVKNWTDVAAGFL----ISF 220
Query: 248 ISNYMTIDIY 277
IS+++ DIY
Sbjct: 221 ISSFLNADIY 230
>UniRef50_Q9CWU0 Cluster: ES cells cDNA, RIKEN full-length enriched
library, clone:2410004F06 product:hypothetical Maternal
tudor protein containing protein, full insert sequence;
n=11; Amniota|Rep: ES cells cDNA, RIKEN full-length
enriched library, clone:2410004F06 product:hypothetical
Maternal tudor protein containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 407
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 30 PTPGPNSLGFGQIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLTDLPQTMIVS*KQPYA 209
P NS+ S SLT +L ++Y ++ N + SLTD P+ M+ +Q
Sbjct: 224 PRQSLNSVTCSSKLSPSLTLWPMLLQGKDYHRMENKALNYKDSLTDSPKMMLEKQQQSLP 283
Query: 210 CSH 218
H
Sbjct: 284 LKH 286
>UniRef50_Q5FU13 Cluster: Acriflavin resistance protein F; n=1;
Gluconobacter oxydans|Rep: Acriflavin resistance protein
F - Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 1092
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 135 RSKNVRASLTDLPQTMIVS*KQPYACSHIFLSSVK*ALSPTI 260
RSK +RASL D QT+I++ A +FL S+ + P I
Sbjct: 323 RSKTIRASLDDTKQTLIIAVVLVVAVVLLFLRSLSAIMVPAI 364
>UniRef50_Q13PL4 Cluster: Cation/multidrug efflux pump,
AcrB/AcrD/AcrFfamily, RND superfamily; n=2;
Burkholderia|Rep: Cation/multidrug efflux pump,
AcrB/AcrD/AcrFfamily, RND superfamily - Burkholderia
xenovorans (strain LB400)
Length = 1106
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 30 PTPGPNSLGFGQIPSSSLTCLKTMLYSQEY-SYKSQRSKNVRASLTDLPQTMIVS*KQPY 206
PTPG N + + S L ++ L S + + RS++VRAS+ D +T+ ++
Sbjct: 287 PTPGSNVVQTVEQIRSRLPIIEAALPSAIHVNVAIDRSESVRASVADTERTLFIAVLLVV 346
Query: 207 ACSHIFLSSVK*ALSPTI 260
+FL S + L P +
Sbjct: 347 GVVFVFLLSPRATLIPAV 364
>UniRef50_A5N796 Cluster: Putative uncharacterized protein; n=1;
Clostridium kluyveri DSM 555|Rep: Putative
uncharacterized protein - Clostridium kluyveri DSM 555
Length = 633
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 184 IIVCGKSVNEARTFLDLCDLYEYSCEYSMVFRHV-KEDDGICPN 56
II G+++NEAR LD+ + S+++ H+ KE ICP+
Sbjct: 551 IISAGENINEARKVLDMINKKYSPFTVSVLYSHLNKELKNICPS 594
>UniRef50_A6RIQ4 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 104
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 63 QIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLT 164
Q +S TCL M++SQ Y+S KN++ T
Sbjct: 57 QCRGASYTCLDCMVHSQGLEYRSHTRKNIKVRYT 90
>UniRef50_A4AMS3 Cluster: Putative uncharacterized protein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
uncharacterized protein - Flavobacteriales bacterium
HTCC2170
Length = 703
Score = 30.3 bits (65), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 139 DLCDLYEYSCEYSMVFRHVKEDDGICPNP 53
D D Y+++ S++ + +K DDG+ P+P
Sbjct: 544 DDSDFYKFNSSNSLIAKIIKNDDGVIPSP 572
>UniRef50_Q9LJQ1 Cluster: Gb|AAD55299.1; n=5; Magnoliophyta|Rep:
Gb|AAD55299.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1232
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 217 CEHAYGCFHDTIIVCGKSVNEARTFLDLCD 128
C AY C H T +CGKS+ + + + D
Sbjct: 1140 CFQAYTCSHYTCPICGKSLGDMAVYFGMLD 1169
>UniRef50_Q8LPQ5 Cluster: AT3g18290/MIE15_8; n=3; core
eudicotyledons|Rep: AT3g18290/MIE15_8 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1254
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 217 CEHAYGCFHDTIIVCGKSVNEARTFLDLCD 128
C AY C H T +CGKS+ + + + D
Sbjct: 1162 CFQAYTCSHYTCPICGKSLGDMAVYFGMLD 1191
>UniRef50_A7E5H6 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 548
Score = 30.3 bits (65), Expect = 9.5
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = +3
Query: 33 TPGPNSLGFGQIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLTDLP-----QTMIVS*K 197
TPGP S+ SSS T S S S S R S TD +T +
Sbjct: 151 TPGPVSISLSGSTSSSTTLFSNATASASISSSSSTSNTTRLSFTDSTLTSSFETFASTIT 210
Query: 198 QPYACSHIFLSS 233
+ S +FLSS
Sbjct: 211 SSFLSSPVFLSS 222
>UniRef50_Q56229 Cluster: NADH-quinone oxidoreductase subunit 14;
n=2; Thermus thermophilus|Rep: NADH-quinone
oxidoreductase subunit 14 - Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579)
Length = 427
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 153 PVHFWTSAICTNTPANTAWFSGTSKKMTEFVQTLR 49
P HFWT + +P F TS K F LR
Sbjct: 191 PFHFWTPDVYQGSPTPVVLFMATSVKAAAFAALLR 225
>UniRef50_Q7VQI3 Cluster: UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase; n=1; Candidatus
Blochmannia floridanus|Rep: UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase - Blochmannia floridanus
Length = 298
Score = 30.3 bits (65), Expect = 9.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 131 AEVQKCTGFVNRFTTDYDRVVKTTVRMLAYFFKFCQVSFIS 253
AE++ GF FT DYD V ++ YFF F SF S
Sbjct: 146 AELRPFNGFTLDFTIDYDHPV-VNMKNKHYFFNFTSKSFRS 185
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 349,959,435
Number of Sequences: 1657284
Number of extensions: 6430808
Number of successful extensions: 15857
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15852
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -