Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p14
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    31   0.051
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   1.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   1.9  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   2.5  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   2.5  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   3.4  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   3.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   4.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   5.9  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 31.1 bits (67), Expect = 0.051
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 71  VIFFDVPENHAVFAGVFVQIAEVQKCTGFVNRF-TTDYDRVVKTTVRMLAYFFKFCQVSF 247
           ++ F VP   A++   F++ A V +   F+ +  TTD    VK    + A F     +SF
Sbjct: 168 LVKFRVPFTRAIW---FIRCAGVNEARSFLRKVQTTDITEWVKNWTDVAAGFL----ISF 220

Query: 248 ISNYMTIDIY 277
           IS+++  DIY
Sbjct: 221 ISSFLNADIY 230


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 80  FDVPENHAVFAGVFVQIAEVQKCTGFVNR 166
           F + +  A  AGVF+   E + C  ++NR
Sbjct: 175 FQLSKGEATKAGVFLNTVETKDCMSWLNR 203


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 156 KPVHFWTSAICTNTP 112
           K V FWTS +CT  P
Sbjct: 262 KNVRFWTSELCTQCP 276


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 57  FGQIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLTDLPQTMIVS*KQPYAC 212
           FG I SS L C      S+ Y + + R         D    M+V  K+ + C
Sbjct: 407 FGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVC 458


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 335 RLNWSSNVDTRKTFSVSFTHICR 267
           R  WS+ +D+ ++F VSF  IC+
Sbjct: 495 RNEWSNFLDSVQSFPVSFHSICK 517


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 340 LFA*IGRQMLIRERHFLFLLLIYVDCHIVGDK 245
           +FA +G  M +  R    L + Y DC  +GD+
Sbjct: 50  VFAPLGAGMFVASRRVKELRIDYTDCMNIGDE 81


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 196 FHDTIIVCGKSVNEARTFLDLCDLYEYSCEYSMVFRHVKED 74
           FH+  +   ++VN   TF      Y+ + +YS+VF  V +D
Sbjct: 32  FHEAFLSEQRTVNNTVTFDRYTMQYQEATQYSIVFVVVFQD 72


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 176 DYDRVVKTTVRMLAYFFKFCQVSFISNYMTIDIYE*KKQK 295
           DYDRV+ TT   +     FC+ + I  ++   + E ++ K
Sbjct: 560 DYDRVLNTTESAIKILANFCEPT-IHEHLETALQELERSK 598


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 158  VNRFTTDYDRVVKTTVRMLAYFFK-FCQVSFI 250
            +NRF++D  RV +   R+  +FF+   Q+ F+
Sbjct: 1002 LNRFSSDVYRVDEVISRVFMFFFRNLFQIVFV 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,103
Number of Sequences: 5004
Number of extensions: 29707
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)