Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p14
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0958 + 9532423-9533202 28 2.3
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 28 2.3
07_01_0307 - 2194796-2199274 27 3.1
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 27 4.0
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 27 4.0
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 27 4.0
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562... 27 5.3
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 26 7.1
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 26 7.1
04_03_0922 + 20834195-20836603 26 7.1
>08_01_0958 + 9532423-9533202
Length = 259
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 97 PCCIRRSIRTNRRGPKMYGLR*QIYHRL*SCR 192
PCC R + RG + LR ++ HR CR
Sbjct: 126 PCCARLPVSIAVRGGLTFELRAEVSHRCTGCR 157
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 217 CEHAYGCFHDTIIVCGKSVNEARTFLDLCD 128
C AY C H T +C KS+ + + + D
Sbjct: 905 CFQAYTCSHYTCPICSKSLGDMTVYFGMLD 934
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 262 HIVGDK-AHLTELKKICEHAYGCFHD 188
H +G + T L C+H YGC HD
Sbjct: 159 HAIGKRLCFSTSLVDDCDHDYGCVHD 184
>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 206 RMLAYFFKFCQVSFISNYMTI--DIYE 280
R+ +F+ C VS NY+TI ++YE
Sbjct: 927 RLTVFFWHMCTVSLFLNYLTIQGEVYE 953
>05_06_0119 +
25742277-25742434,25742976-25743061,25743146-25743223,
25743919-25744031,25744094-25744171,25744941-25744949,
25744981-25745082,25745165-25745714,25745941-25746146,
25746868-25747031,25747157-25747310
Length = 565
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 153 PVHFWTSAICTNTPANTAWFSGTSKK 76
P + WT A CT+ +N W +KK
Sbjct: 514 PGYSWTIASCTDCESNIGWLFKATKK 539
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 92 ENHAVFAGVFVQIAEVQKCTG 154
ENHA A VFV++A++ TG
Sbjct: 452 ENHATVASVFVRLADLYNKTG 472
>07_03_1204 +
24855052-24855210,24855411-24855974,24856157-24856225,
24856304-24856426,24856733-24856864,24857143-24857266,
24857547-24857614,24857849-24857991,24858615-24858722,
24858826-24858901,24859442-24859578,24859660-24859819,
24859901-24860080,24860159-24860275,24860540-24860695,
24861209-24861379,24861479-24861591,24861669-24861792,
24861961-24862056,24862139-24862201,24862299-24862364
Length = 982
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVC-GKSVNEARTFLDLCDL 125
L LK+IC + YG H T I C S N ++L L
Sbjct: 381 LRRLKRICSNIYGS-HPTFIFCTATSANPREHVMELAKL 418
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/31 (32%), Positives = 12/31 (38%)
Frame = -3
Query: 162 LTKPVHFWTSAICTNTPANTAWFSGTSKKMT 70
L +P W C N P W+ G MT
Sbjct: 198 LNEPTRQWHCPACKNGPGAIDWYKGLQPLMT 228
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 271 VDCHIVGDKAHLTELKKICEHAY 203
VDC+I+ ++ T LK IC+ Y
Sbjct: 255 VDCNILSALSNATSLKLICDSVY 277
>04_03_0922 + 20834195-20836603
Length = 802
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -2
Query: 271 VDCHIVGDKAHLTELKKICEHAYGCFHD 188
+D ++ GD A+LTE++++C+ A C D
Sbjct: 734 IDPNLHGD-ANLTEVERVCKVACWCIQD 760
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,635
Number of Sequences: 37544
Number of extensions: 171126
Number of successful extensions: 355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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