Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p14
(347 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072) 28 2.4
SB_57415| Best HMM Match : AlkA_N (HMM E-Value=0.56) 28 2.4
SB_19544| Best HMM Match : Ribosomal_S18 (HMM E-Value=4.9) 28 2.4
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20) 27 3.2
SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38) 27 3.2
SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8) 27 3.2
SB_56671| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08) 27 4.2
SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39) 26 7.3
SB_28991| Best HMM Match : EGF_2 (HMM E-Value=2.9e-06) 26 7.3
SB_15863| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23) 26 7.3
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07) 26 9.7
SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08) 26 9.7
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 30.7 bits (66), Expect = 0.34
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 226 KKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEYSMVFRHVKEDDGIC 62
K +CE C D VCG + +T+ +LC++ + SCE R + GIC
Sbjct: 4232 KPVCECPSRCLPDKEPVCGA---DGKTYRNLCEIRKASCE--GWHRDNRRKQGIC 4281
>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
Length = 196
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 199 CFHDTIIVCGKSVNEARTFLDLCDLYEYSCEYSM 98
C + I VC V E F +LC+L++++C Y +
Sbjct: 18 CLDERITVCSVYVLE---FNNLCELHKFACRYEI 48
>SB_57415| Best HMM Match : AlkA_N (HMM E-Value=0.56)
Length = 214
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 60 GQIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLTDLPQTM 182
GQ+P S L+CL + E + R + V +TDLPQ +
Sbjct: 158 GQLPGSRLSCLSIV----EEGDRLNRIQQVYTRITDLPQLL 194
>SB_19544| Best HMM Match : Ribosomal_S18 (HMM E-Value=4.9)
Length = 208
Score = 27.9 bits (59), Expect = 2.4
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNE----ARTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + + L + CE+
Sbjct: 58 MTDLLKNQEGAYAIIDDVIIV-GKNPEEHDKRLRETLQIIEESGLKLNKEKCEFRKKKIS 116
Query: 97 VFRHVKEDDGICPNPKEL 44
F HV GI PNP+++
Sbjct: 117 YFGHVINQQGISPNPEKV 134
>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
Length = 745
Score = 27.5 bits (58), Expect = 3.2
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNE----ARTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + + L + CE+
Sbjct: 58 MTDLLKNQEGAYAIMDDVIIV-GKTPEEHDKRLRETLKIIEESGLKLNKEKCEFRKKEIS 116
Query: 97 VFRHVKEDDGICPNPKEL 44
F HV GI PNP+++
Sbjct: 117 YFGHVINQQGISPNPEKV 134
>SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)
Length = 469
Score = 27.5 bits (58), Expect = 3.2
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNE----ARTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + + L + CE+
Sbjct: 317 MTDLLKNQEGAYAIMDDVIIV-GKTPEEHDKRLRETLKIIEESGLKLNKEKCEFRKKEIS 375
Query: 97 VFRHVKEDDGICPNPKEL 44
F HV GI PNP+++
Sbjct: 376 YFGHVINQQGISPNPEKV 393
>SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 507
Score = 27.5 bits (58), Expect = 3.2
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNE----ARTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + + L + CE+
Sbjct: 58 MTDLLKNQEGAYAIMDDVIIV-GKTPEEHDKRLRETLKIIEESGLKLNKEKCEFRKKEIS 116
Query: 97 VFRHVKEDDGICPNPKEL 44
F HV GI PNP+++
Sbjct: 117 YFGHVINQQGISPNPEKV 134
>SB_56671| Best HMM Match : RVT_1 (HMM E-Value=9.3e-08)
Length = 202
Score = 27.1 bits (57), Expect = 4.2
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNEA----RTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + + L + CE+
Sbjct: 127 MTDLLKNQEGAYAIMDDVIIV-GKTPEEQDKRLRETLKIIEESGLKLNKEKCEFRKKEIS 185
Query: 97 VFRHVKEDDGICPNPKE 47
F HV GI PNP++
Sbjct: 186 YFGHVINQQGISPNPEK 202
>SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)
Length = 319
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 54 GFGQIPSSSLTCLKTMLYSQEYSYKSQRSKNV 149
G G PSSSLT K S ++Y R + V
Sbjct: 127 GIGVAPSSSLTVFKPFFVSFTFAYSVIRGERV 158
>SB_28991| Best HMM Match : EGF_2 (HMM E-Value=2.9e-06)
Length = 263
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -2
Query: 226 KKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEYSMVFRHVKEDDGICP 59
+ +C+ + C + VC ++ N T L LC++Y C + + + + E CP
Sbjct: 37 RHVCDQSEFCTGSSN-VCPENSNS--TVLSLCEIYGGLCSHDVCYPALAEQRISCP 89
>SB_15863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 26.2 bits (55), Expect = 7.3
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNE----ARTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + L + CE+
Sbjct: 259 MTDLLKNQEGAYSIMDDVIIV-GKTPEEHDKGLRETLKIIKESGLKLNKEKCEFRKKEIS 317
Query: 97 VFRHVKEDDGICPNPKEL 44
F HV GI PNP+++
Sbjct: 318 YFGHVINQQGISPNPEKV 335
>SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)
Length = 1062
Score = 26.2 bits (55), Expect = 7.3
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Frame = -2
Query: 238 LTELKKICEHAYGCFHDTIIVCGKSVNE----ARTFLDLCD-----LYEYSCEYSM---- 98
+T+L K E AY D IIV GK+ E R L + L + CE+
Sbjct: 689 MTDLLKNQEGAYAIMDDVIIV-GKTPEEHDKRLRETLKIIKESGLKLNKEKCEFRKKEIS 747
Query: 97 VFRHVKEDDGICPNPKEL 44
F HV GI PNP+++
Sbjct: 748 YFGHVINQQGISPNPEKV 765
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 206 RMLAYFFKFCQVSFISN 256
R + FFKFC V+FI N
Sbjct: 731 RYMLLFFKFCVVAFICN 747
>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
Length = 349
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 71 VIFFDVPENHAVFAGVFVQIAEVQKCTGFVNRFTTDYDRVVKTTVRMLAYFFKF 232
V+ FD+ +N A+ A F+ V+ +G+V+ + + ++ VR F F
Sbjct: 216 VLDFDIKKNGALTALPFIATLIVKNTSGYVSDRLQKHPSISRSVVRKGMTFLSF 269
>SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08)
Length = 244
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 256 VGDKAHLTELKKICEHAY 203
VGDK +T+ KK EH Y
Sbjct: 168 VGDKVRITKKKKTFEHGY 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,110,447
Number of Sequences: 59808
Number of extensions: 223559
Number of successful extensions: 533
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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