Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p14
         (347 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M84443-1|AAA58612.1|  458|Homo sapiens galactokinase protein.          29   4.0  
BT006901-1|AAP35547.1|  458|Homo sapiens galactokinase 2 protein.      29   4.0  
BC024273-1|AAH24273.1|  540|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    29   4.0  
BC005141-1|AAH05141.1|  458|Homo sapiens galactokinase 2 protein.      29   4.0  
AK002144-1|BAA92106.1|  540|Homo sapiens protein ( Homo sapiens ...    29   4.0  
AF329821-1|AAG59833.1|  540|Homo sapiens putative DEAD-box helic...    29   4.0  
AJ005821-1|CAA06718.2| 3027|Homo sapiens X-like 1 protein protein.     29   5.3  
BC001940-1|AAH01940.2|  748|Homo sapiens hypothetical protein DK...    28   9.3  
AK074809-1|BAC11221.1|  748|Homo sapiens protein ( Homo sapiens ...    28   9.3  
AB162218-1|BAD36741.1|  748|Homo sapiens hFLEG1 protein.               28   9.3  

>M84443-1|AAA58612.1|  458|Homo sapiens galactokinase protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 262 HIVGDKAHLTELKKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSC 110
           H+  + A + + KKICE A     + + + G+ +N++   +   D+YE SC
Sbjct: 334 HVYSEAARVLQFKKICEEAP---ENMVQLLGELMNQSH--MSCRDMYECSC 379


>BT006901-1|AAP35547.1|  458|Homo sapiens galactokinase 2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 262 HIVGDKAHLTELKKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSC 110
           H+  + A + + KKICE A     + + + G+ +N++   +   D+YE SC
Sbjct: 334 HVYSEAARVLQFKKICEEAP---ENMVQLLGELMNQSH--MSCRDMYECSC 379


>BC024273-1|AAH24273.1|  540|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 28 protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 137 PLRFVRILLRIQHGFQARQRR*RNLSKP*GIRTG 36
           PL  VRI + +Q   + RQ R RNL +P  +R G
Sbjct: 32  PLPVVRIPVALQRQLEQRQSRRRNLPRPVLVRPG 65


>BC005141-1|AAH05141.1|  458|Homo sapiens galactokinase 2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 262 HIVGDKAHLTELKKICEHAYGCFHDTIIVCGKSVNEARTFLDLCDLYEYSC 110
           H+  + A + + KKICE A     + + + G+ +N++   +   D+YE SC
Sbjct: 334 HVYSEAARVLQFKKICEEAP---ENMVQLLGELMNQSH--MSCRDMYECSC 379


>AK002144-1|BAA92106.1|  540|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11282 fis, clone PLACE1009476, weakly similar to
           PUTATIVE ATP-DEPENDENT RNA HELICASE T26G10.1 IN
           CHROMOSOME III. ).
          Length = 540

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 137 PLRFVRILLRIQHGFQARQRR*RNLSKP*GIRTG 36
           PL  VRI + +Q   + RQ R RNL +P  +R G
Sbjct: 32  PLPVVRIPVALQRQLEQRQSRRRNLPRPVLVRPG 65


>AF329821-1|AAG59833.1|  540|Homo sapiens putative DEAD-box helicase
           MDDX28 protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 137 PLRFVRILLRIQHGFQARQRR*RNLSKP*GIRTG 36
           PL  VRI + +Q   + RQ R RNL +P  +R G
Sbjct: 32  PLPVVRIPVALQRQLEQRQSRRRNLPRPVLVRPG 65


>AJ005821-1|CAA06718.2| 3027|Homo sapiens X-like 1 protein protein.
          Length = 3027

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 202  GCFHDTIIVCGKSVNEARTFLDLCDLYEYSCEYSMVFRHV 83
            GC  D I VC + +N+ +  L +  LYE   + S  ++ +
Sbjct: 1705 GCLRDAIEVCLEKLNDIQLALVIARLYESEFDTSAAYKSI 1744


>BC001940-1|AAH01940.2|  748|Homo sapiens hypothetical protein
           DKFZp762E1312 protein.
          Length = 748

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 36  PGPNSLGFGQIPSSSLTCLKTMLYS 110
           P P+  GF ++PSS L C K++L S
Sbjct: 629 PDPHFQGFQKLPSSPLGCRKSLLGS 653


>AK074809-1|BAC11221.1|  748|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90328 fis, clone NT2RP2001921. ).
          Length = 748

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 36  PGPNSLGFGQIPSSSLTCLKTMLYS 110
           P P+  GF ++PSS L C K++L S
Sbjct: 629 PDPHFQGFQKLPSSPLGCRKSLLGS 653


>AB162218-1|BAD36741.1|  748|Homo sapiens hFLEG1 protein.
          Length = 748

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 36  PGPNSLGFGQIPSSSLTCLKTMLYS 110
           P P+  GF ++PSS L C K++L S
Sbjct: 629 PDPHFQGFQKLPSSPLGCRKSLLGS 653


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,011,176
Number of Sequences: 237096
Number of extensions: 979928
Number of successful extensions: 5392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5392
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)