Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p14
         (347 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060468-1|AAL25507.1|  119|Drosophila melanogaster SD05282p pro...    28   2.8  
AE013599-3898|AAF47226.2|  156|Drosophila melanogaster CG13586-P...    28   2.8  
AE014297-408|AAF51914.1|  730|Drosophila melanogaster CG1077-PA ...    28   3.7  
BT014648-1|AAT27272.1|  650|Drosophila melanogaster RE36656p pro...    27   4.9  
BT003538-1|AAO39542.1|  995|Drosophila melanogaster RE07016p pro...    27   4.9  
AY122158-1|AAM52670.1|  927|Drosophila melanogaster LD11783p pro...    27   4.9  
AF254741-1|AAF66064.1| 1006|Drosophila melanogaster Centaurin Ga...    27   4.9  
AE014134-2423|AAF53350.2|  763|Drosophila melanogaster CG31811-P...    27   4.9  
AE014134-2422|AAF53349.2|  927|Drosophila melanogaster CG31811-P...    27   4.9  
AE014134-2415|AAF53343.2|  995|Drosophila melanogaster CG31811-P...    27   4.9  
AE013599-1723|AAF58369.1|  417|Drosophila melanogaster CG6016-PB...    27   4.9  
AE013599-1722|AAF58370.1|  417|Drosophila melanogaster CG6016-PA...    27   4.9  
BT029280-1|ABK30917.1| 1191|Drosophila melanogaster IP14007p pro...    27   8.6  
AE014296-2642|AAF49534.1| 1191|Drosophila melanogaster CG12272-P...    27   8.6  

>AY060468-1|AAL25507.1|  119|Drosophila melanogaster SD05282p
           protein.
          Length = 119

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 346 IPLFA*IGRQMLIRERHFLFLLLIYVDCHIVGDKAHLTELKKICEHAYGCFHDTII--VC 173
           IP+FA +     + +R   F L    +C  + +K     L +ICE  Y  F +T I  +C
Sbjct: 17  IPIFAALPHNHNLSKRSNFFDL----ECKGIFNKTMFFRLDRICEDCYQLFRETSIHRLC 72

Query: 172 GKSVNEARTF 143
            K   +++ F
Sbjct: 73  KKDCFDSKWF 82


>AE013599-3898|AAF47226.2|  156|Drosophila melanogaster CG13586-PA,
           isoform A protein.
          Length = 156

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 346 IPLFA*IGRQMLIRERHFLFLLLIYVDCHIVGDKAHLTELKKICEHAYGCFHDTII--VC 173
           IP+FA +     + +R   F L    +C  + +K     L +ICE  Y  F +T I  +C
Sbjct: 54  IPIFAALPHNHNLSKRSNFFDL----ECKGIFNKTMFFRLDRICEDCYQLFRETSIHRLC 109

Query: 172 GKSVNEARTF 143
            K   +++ F
Sbjct: 110 KKDCFDSKWF 119


>AE014297-408|AAF51914.1|  730|Drosophila melanogaster CG1077-PA
           protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 178 VCGKSVNEARTFLDLCDLYEYS 113
           VCG    ++RTF ++C+L E+S
Sbjct: 296 VCGNLRGQSRTFSNVCELMEFS 317


>BT014648-1|AAT27272.1|  650|Drosophila melanogaster RE36656p
           protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 430 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 463


>BT003538-1|AAO39542.1|  995|Drosophila melanogaster RE07016p
           protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 775 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 808


>AY122158-1|AAM52670.1|  927|Drosophila melanogaster LD11783p
           protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 707 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 740


>AF254741-1|AAF66064.1| 1006|Drosophila melanogaster Centaurin Gamma
           1A protein.
          Length = 1006

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 786 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 819


>AE014134-2423|AAF53350.2|  763|Drosophila melanogaster CG31811-PC,
           isoform C protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 543 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 576


>AE014134-2422|AAF53349.2|  927|Drosophila melanogaster CG31811-PA,
           isoform A protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 707 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 740


>AE014134-2415|AAF53343.2|  995|Drosophila melanogaster CG31811-PB,
           isoform B protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 120 NTPANTAWFSGTSKKMTEFVQTLRN*DREWVKSK 19
           N+ AN+ W S T +++    Q  R     WV+SK
Sbjct: 775 NSLANSVWESNTRQRVKPTSQASREDKERWVRSK 808


>AE013599-1723|AAF58369.1|  417|Drosophila melanogaster CG6016-PB,
           isoform B protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 283 LLIYVDCHIVGDKAHLTELKKICEHAYGCFHDTII 179
           LL Y D HI+  +    +L+K+ EH Y CF  +++
Sbjct: 3   LLAYRDKHILSAQ----QLRKLSEHKYSCFSVSLL 33


>AE013599-1722|AAF58370.1|  417|Drosophila melanogaster CG6016-PA,
           isoform A protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 283 LLIYVDCHIVGDKAHLTELKKICEHAYGCFHDTII 179
           LL Y D HI+  +    +L+K+ EH Y CF  +++
Sbjct: 3   LLAYRDKHILSAQ----QLRKLSEHKYSCFSVSLL 33


>BT029280-1|ABK30917.1| 1191|Drosophila melanogaster IP14007p
           protein.
          Length = 1191

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 325 GRQMLIRERHFLFLLLIYVDCHIVGD 248
           GRQ+L    +   ++L+ VD HI GD
Sbjct: 133 GRQLLCESLYLFGVILLMVDFHIPGD 158


>AE014296-2642|AAF49534.1| 1191|Drosophila melanogaster CG12272-PA
           protein.
          Length = 1191

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 325 GRQMLIRERHFLFLLLIYVDCHIVGD 248
           GRQ+L    +   ++L+ VD HI GD
Sbjct: 133 GRQLLCESLYLFGVILLMVDFHIPGD 158


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,744
Number of Sequences: 53049
Number of extensions: 306230
Number of successful extensions: 1245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 817309116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)