Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p13
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   3.2  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   7.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 79  VMTSHLDTA*KTCNSFIKKYEDNNC 5
           ++TSHLDT  K  + FI+K + ++C
Sbjct: 266 LITSHLDTLTKGISQFIEKRDAHSC 290


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 YTNSNTPPQHLHTFFSVYNLIPKKNNAN 265
           YT ++  PQ   T+ SVY  +P+K  AN
Sbjct: 153 YTMNDLFPQSFPTWISVYRNVPEKAWAN 180


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 233 RRRKMCASVEGVCWSLY 183
           R  ++C+S++ +CW LY
Sbjct: 231 RLYRLCSSLKRICWELY 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,714
Number of Sequences: 5004
Number of extensions: 55462
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)