Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p12
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 36 0.026
11_01_0768 - 6442332-6443792 30 2.3
07_01_0161 + 1132505-1132704,1132839-1134075 30 2.3
06_01_0136 + 1043888-1044487 30 2.3
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 30 2.3
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 29 4.0
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 7.0
04_04_1555 + 34376612-34376887,34377306-34377450,34377891-343780... 28 7.0
01_06_0751 + 31690411-31690443,31692900-31694240 28 7.0
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 9.2
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/103 (27%), Positives = 49/103 (47%)
Frame = -2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 198
M+ A I + TD ++ + K +K D+ + +D K + +E DE+++++ C
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199
Query: 197 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKG 69
P +H TKS ++ + D S T S QRF+ G G
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRFERFANGAG 241
>11_01_0768 - 6442332-6443792
Length = 486
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 206 TCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKGIAGRKDL-SRAGPA 30
T G T+ SPAA + VD+ +TS GS + T G A K+ S AG A
Sbjct: 416 TSAAAGSTADKETSPAAESTVDK--ETSAVAGSTADK--NTYPAAGSAAEKETSSAAGSA 471
Query: 29 TSLDTQP 9
+DT P
Sbjct: 472 PVVDTAP 478
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = -2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 198
M+ A I + TD ++ + K +K D+ + ++ K + +E DE+++++ C
Sbjct: 121 MEAALEISSRWPPVTDASL-LRWRKKLKRTSDECSQVMER-CKRRAMEDDEMEQEVRQCA 178
Query: 197 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKG 75
P +H T+S ++ + D S T S Q+F+ G
Sbjct: 179 FPKRIAHATRSFLSSFTGQKKVD-SLITTSTIQKFERLADG 218
>06_01_0136 + 1043888-1044487
Length = 199
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 25 DVAGPARLRSFLPAIPFPFPVSSKRCLCEPVYLLVSVNRSTAAAAAGDFVTC 180
+VA A++R + + + P + R C VY +V+ N+S AAAA+ + C
Sbjct: 147 NVAVAAQVRFKVAGVVYTRPYNV-RVSCSDVYFVVADNKSAAAAASSTPIDC 197
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = -2
Query: 725 ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 546
AT G+++ A +A+ L AT + M S + L E Q D + + T V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174
Query: 545 KDVKLEN 525
KD +L+N
Sbjct: 175 KDEELQN 181
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 22 SDVAGPARLRSFLPAIPFPFPVSSKRCLCEPVYLLVSVNRSTAAAA 159
S + GP L P+ PFP V ++ L EP + S+ R T A
Sbjct: 42 SALEGPRELVVLRPSDPFPIGVVNREDLFEPCIMPTSLARETELCA 87
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 423 QVRWKSHHALAKRQMDEASQSH*WKENNNNGHGHSLQKTQIGKTR 289
++RWK K++ ++A S ENNN H K Q R
Sbjct: 1006 KLRWKGQKMSKKKEDEDAELSRLKAENNNAEEAHGDAKRQFDSIR 1050
>04_04_1555 +
34376612-34376887,34377306-34377450,34377891-34378000,
34378121-34378418,34378591-34379006
Length = 414
Score = 28.3 bits (60), Expect = 7.0
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Frame = -2
Query: 401 TLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDY-QKFLDDLAKNKKVELDE 225
T S W +A + + A+ + + SV +D+ Q L++L ++ ++DE
Sbjct: 103 TRSPDLSWQMRATRVLPMFLIPALAALIYSTITSVTKMLDNRDQHTLENLRAERQAKIDE 162
Query: 224 IKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRF--DETGKGKGIAGRKD 51
+K++ + PAA AA + + S + F DE+ + ++ D
Sbjct: 163 LKERTNYYTTQQLIQRYDLDPAAKAAAATVLASKLGADSGLRVFLGDESNRDATLSKSND 222
Query: 50 LSRAGP 33
GP
Sbjct: 223 AQTTGP 228
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -2
Query: 329 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 150
TAI F ++ +LG D K +D L +N K +DE+ + P S T+ P
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217
Query: 149 AVDRLTDTS 123
A ++ T TS
Sbjct: 218 ATEQATSTS 226
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 605 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 498
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,941,056
Number of Sequences: 37544
Number of extensions: 417152
Number of successful extensions: 1329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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