Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p10
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 39 0.003
U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical pr... 31 0.90
U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical pr... 31 0.90
AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical ... 30 1.6
U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z92830-6|CAB07359.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40413-5|AAK39175.1| 599|Caenorhabditis elegans Hypothetical pr... 29 3.6
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 28 6.3
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 28 6.3
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 8.4
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 8.4
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical pr... 28 8.4
U40060-3|AAA81142.2| 974|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80 prot... 28 8.4
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = -2
Query: 516 AQKKQVLAQLNNLRETEVR-ELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQ 340
A+KK+ L+N R T +R E V L ++ W+ ++ + T L K ++
Sbjct: 1183 ARKKRPQRSLDNRRATAIRREWVDGVTLKVFEIKDYWKWIRAEAEKTAKRKLEATRKAQK 1242
Query: 339 TALDCLVRLIESRRSK-LARIPIPLHSLPPLEPRDN 235
D R I+ ++ + +ARIP+P+HSL P E R+N
Sbjct: 1243 AKEDEERRRIQQQQQRSVARIPVPMHSLIPSE-RNN 1277
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
F26H11.2b protein.
Length = 1693
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = -2
Query: 516 AQKKQVLAQLNNLRETEVR-ELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQ 340
A+KK+ L+N R T +R E V L ++ W+ ++ + T L K ++
Sbjct: 1183 ARKKRPQRSLDNRRATAIRREWVDGVTLKVFEIKDYWKWIRAEAEKTAKRKLEATRKAQK 1242
Query: 339 TALDCLVRLIESRRSK-LARIPIPLHSLPPLEPRDN 235
D R I+ ++ + +ARIP+P+HSL P E R+N
Sbjct: 1243 AKEDEERRRIQQQQQRSVARIPVPMHSLIPSE-RNN 1277
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
F26H11.2a protein.
Length = 1691
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = -2
Query: 516 AQKKQVLAQLNNLRETEVR-ELESTVRLSDRKLFKSWEALKDSTDPTVFEPLLEEIKNRQ 340
A+KK+ L+N R T +R E V L ++ W+ ++ + T L K ++
Sbjct: 1183 ARKKRPQRSLDNRRATAIRREWVDGVTLKVFEIKDYWKWIRAEAEKTAKRKLEATRKAQK 1242
Query: 339 TALDCLVRLIESRRSK-LARIPIPLHSLPPLEPRDN 235
D R I+ ++ + +ARIP+P+HSL P E R+N
Sbjct: 1243 AKEDEERRRIQQQQQRSVARIPVPMHSLIPSE-RNN 1277
>U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical
protein C06A8.1b protein.
Length = 642
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 303 RRSKLARIPIPLHSLPPLEP-RDNDDSCTTYGRKR 202
R +KL+++ IP H L LEP + +DD+ YG +R
Sbjct: 259 RIAKLSQLEIPQHILDDLEPIKHDDDAVQKYGTER 293
>U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical
protein C06A8.1a protein.
Length = 663
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 303 RRSKLARIPIPLHSLPPLEP-RDNDDSCTTYGRKR 202
R +KL+++ IP H L LEP + +DD+ YG +R
Sbjct: 280 RIAKLSQLEIPQHILDDLEPIKHDDDAVQKYGTER 314
>AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical
protein F35B3.7 protein.
Length = 578
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 570 RNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKLFKSWEALKDS 391
+NA + ++ T+ +RK++ +K L R ++ TV+L D+ S ++K S
Sbjct: 89 KNATECLAETKIERKSICREKTHKSIVLPQPRFYTCERIQKTVKLPDKSKSSSAMSIKKS 148
Query: 390 T 388
T
Sbjct: 149 T 149
>U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical
protein K02B2.1 protein.
Length = 457
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -2
Query: 417 KSWEALKDSTDPTVFEPLLEE---IKNRQTALDCLVRLIESRR-SKLARIPIPLHSLPPL 250
+S+E + +P + E + + + Q L C++ R S+L I IPLHSL L
Sbjct: 362 ESYEDVVSRLEPVIMELERQANVLVVSHQAVLRCVLAYFYDRPLSELPYIDIPLHSLVKL 421
Query: 249 EPRDNDDSCTTY 214
PR T Y
Sbjct: 422 TPRAYHCDSTIY 433
>Z92830-6|CAB07359.2| 360|Caenorhabditis elegans Hypothetical
protein F11A5.7 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 558 DVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRK-LFKSWEALKDSTD 385
D+V+ + + K VR+ + N + T R+++ +RL+D LFKSW + D D
Sbjct: 264 DLVNISFPKLKRVRSDNLHSIVFTGNNQNTS-RDVDGCIRLADDLGLFKSWSPIFDGKD 321
>U40413-5|AAK39175.1| 599|Caenorhabditis elegans Hypothetical
protein C18B2.6 protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 296 ERRDSIKRTRQSSAVCLFLISSSNGSKTVGSVESLSASQLLN 421
+RR +I+RTR A C+ ++ + TV SL+ SQ L+
Sbjct: 4 QRRSTIRRTRFDEASCVMYMNGNFPETTVVRSHSLTQSQSLS 45
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = -2
Query: 576 EARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKL 421
E R+A+D+++ + +R + Q K+++ +LNN R ++ E E ++ ++L
Sbjct: 123 ELRSAKDLIADSDKERAQLEDQIKKLVEELNNYR-NKLHEAERGADVTRKEL 173
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = -2
Query: 576 EARNARDVVSRTRTQRKAVRAQKKQVLAQLNNLRETEVRELESTVRLSDRKL 421
E R+A+D+++ + +R + Q K+++ +LNN R ++ E E ++ ++L
Sbjct: 104 ELRSAKDLIADSDKERAQLEDQIKKLVEELNNYR-NKLHEAERGADVTRKEL 154
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 605 RPEKWLHWPR--KHGTHGTSYRARGHKGKLCAHRRSKFLLNSI 483
R EKW HW R + G T+YR RG + K L + +
Sbjct: 487 RLEKWFHWIRITQSGPTRTTYRWRGRNETIKTELNPKTLSSGL 529
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 605 RPEKWLHWPR--KHGTHGTSYRARGHKGKLCAHRRSKFLLNSI 483
R EKW HW R + G T+YR RG + K L + +
Sbjct: 484 RLEKWFHWIRITQSGPTRTTYRWRGRNETIKTELNPKTLSSGL 526
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 605 RPEKWLHWPR--KHGTHGTSYRARGHKGKLCAHRRSKFLLNSI 483
R EKW HW R + G T+YR RG + K L + +
Sbjct: 491 RLEKWFHWIRITQSGPTRTTYRWRGRNETIKTELNPKTLSSGL 533
>Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical
protein K10G9.3 protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -2
Query: 591 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLN-----NLRETEVRELESTVR 439
A A A N+ VSR + R +V A+KK +L +N NLR + +TVR
Sbjct: 14 AEKIAFAENSDQTVSRVDSNRYSVAAEKKFLLYDVNFGEGFNLRRDVYMRVANTVR 69
>U40060-3|AAA81142.2| 974|Caenorhabditis elegans Hypothetical
protein F38B6.4 protein.
Length = 974
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 289 ELRTTRLNQTHKTVERGLPVLDFLKQWFEDSR-ICGVFERLPTLEQLSVRKSNG 447
+L T++ H E GLP DF+ E+ + + VFERLP + SV K++G
Sbjct: 97 QLETSKSFSKHFMKEYGLPTADFVTVSIENVKSLDCVFERLPW--KNSVVKADG 148
>AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80
protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -2
Query: 591 ASLAAEARNARDVVSRTRTQRKAVRAQKKQVLAQLN-----NLRETEVRELESTVR 439
A A A N+ VSR + R +V A+KK +L +N NLR + +TVR
Sbjct: 14 AEKIAFAENSDQTVSRVDSNRYSVAAEKKFLLYDVNFGEGFNLRRDVYMRVANTVR 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,688,725
Number of Sequences: 27780
Number of extensions: 281741
Number of successful extensions: 910
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -